ttc4 (ttc4,LOC107659046,LOC107738930,LOC107709194,LOC107692369)


Basic Information

Item Value
gene id ttc4
gene name ttc4,LOC107659046,LOC107738930,LOC107709194,LOC107692369
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14197692 ~ 14200743 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242907.1
atGGCTGCGCCAGCTCAAGGCGAGGACAGTGACGATGGTATGGATGAATATGAGAAgtttaaaacacagaaatacaaaaatgcgTTTAATGAAAGCAGCTGGGAGGAGGAGTTTGATAAGGTGCCCATGTTCATGAAGACAGCCCCAGAAAACATAGATCCAGAGAAACCTGATCTTGCCTGCATTCAGTCTATTATCCATGATGATGACAGAACACCAGAGGagaaAGCCAGAAGTCTAAAGGATGAAGGCAATGAGTACTTTAAGGAGAAAAATTATAAGAAAGCCATAGTGTCTTACACAGAAGGATTGAAAAAGAACTGCATGGATATTGAACTCAATGCGGTTTTGCACACCAACCGTGCAGCTGCACATTTCCATTTAGGAAATATGCGTTCAGCGTTGAATGATGCCACAGCTGCAAAAAAACTGAAGCCAGACCACCATAAAGCTATAATCAGAGGTGCACAGTGCTCAGTGGAGCTGCGTGATTATGCAGGAGCCTTGCAGTGGTGTGTGAAGGTCTCTCGACTGATTCCCACTGACAGGAAACTACAGGAGCTGAGAGCCACAGCTGATAAACAGAAGAGGGAAGCTGACAGAGATGCCAGGAAGGCAAAAGTCAAAGCGAAAAAGGAGCAGAATGAGAAGGAAGCATTGTTAGCTGCCATTAAGgagCGTGGCATTAAACTTCTGAAGACCGAGACTTCTCAACACAGGGGTTCGGAcagtgaggatgatgatggtgcATCTAGAGCCCTAGCGGATCTGGAGCTTGATGGAATTGGCTCCCAGGAGGCCACTGGAGCTCGTGTTTATATGGATGAGCAGGGGGTCCTTCACTGGCCGGTGCTTTTCCTCTACCCCGAGCACAGCCAGACGGACTTCATATCTGCCTTCTGCGAGAACTCCAGCTTCATGGACCATTTGGCAGTTATGTTTGGTGAAGAGCTTCCCCCCTGGGATTCAGAAAGAAAATACCAGCCACAAAATCTACAGctgttttttgaGGATCACAAAAAAGGAAGCCTTTATCAAGTCGATCTCGAAAAGTCACTTCTTAACGTTCTTCAGCACCAAAGgtgCTCGGTGAAGGCAGGGACACCTAGTTTCATTGTGCTGGTATCAGGCTCTCCGTTTTCTAAGCAgtttttatcagaaaaaaaggtcCAGAGATTGAAATGATGGTCTGTTTGGACCTTAAAAGACTTGAAACGCCTTGGCTATAAATCACCCTCCTGCTATTAAGGGCATTTCTGCTCGCCTCACCCTTTGAGAAAACTCTAGAGATTAAGGCAGAACTTTTGAAGTGGATTTCCTTTGCAGCAACATTAATGATTCACTTTAAAAGCATGTACTATCCCAACCCTCACCCATTTTGGTGGAGGAAAAAATTCTTTCATGTGCAGTTTGAGGTATGAGTCATTACATGTGTAAGATACACATATAAAGctgattatttttagattagtCAGTATTTAACTGTGCATTTTTACTGTTGctcatattgttccaaatagtgtttttttttttttttttcaatggaaCACTCAAGAAAATATTAACCATGGAACATTTTGACTTCCATTTGAgttgacagaaaaacaatgagacacttcttaaaatataagaaagtcatacagtttTGGAATGTCATGagtatgaataaatgatgacagaattca

Function

symbol description
ttc4 Predicted to enable Hsp90 protein binding activity and actin binding activity. Acts upstream of or within cilium assembly; determination of heart left/right asymmetry; and otolith morphogenesis. Orthologous to human TTC4 (tetratricopeptide repeat domain 4).

NR:

description
PREDICTED: tetratricopeptide repeat protein 4

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K24927 TTC4, CNS1; tetratricopeptide repeat protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242907.1 True 1685 mRNA 0.42 12 14197692 14200743

Neighbor

gene id symbol gene type direction distance location
lurap1 lurap1,LOC107709195,LOC107590621,LOC107692438,LOC107591165,LOC107659044 coding downstream 7363 14179872 ~ 14190329 (-)
cldn33b LOC107739195,LOC107591162,LOC107659043,LOC107709197,LOC107590677,LOC107692437 coding downstream 69375 14126574 ~ 14128317 (-)
lrrc7 lrrc7,LOC107709201,LOC107692363,LOC107739104 coding downstream 157529 13986047 ~ 14040163 (-)
mrpl47 LOC107659009,LOC107732024,LOC107590634,LOC107709209,LOC107692352,LOC107548661 coding downstream 504866 13691026 ~ 13692826 (-)
nme7 nme7,LOC107659027,LOC107731836,LOC107732015,LOC107692347,LOC107548663 coding downstream 558747 13607516 ~ 13638945 (-)
pde4ba pde4b,pde4ba,LOC107659050,LOC107692372,LOC108443455,LOC107591166,LOC105913193 coding upstream 84754 14285497 ~ 14402960 (-)
lepr LOC107709190,LOC107738956,LOC107692373,LOC107591169,LOC107659051 coding upstream 214066 14414809 ~ 14450272 (-)
dnajc6 dnajc6,LOC107659052,LOC107692374,LOC107591170,LOC107590617 coding upstream 258246 14458989 ~ 14485480 (-)
ak4 ak4,LOC107590615,LOC107659053,LOC107692375,LOC107591174 coding upstream 284863 14485606 ~ 14492466 (-)
raver2 raver2,LOC107709187,LOC107659056,LOC107556545,LOC107692377,LOC107739056,LOC107591176 coding upstream 322939 14523682 ~ 14583001 (-)
G45225 lrrc40,LOC107590628,LOC107709203 non-coding downstream 215807 13981229 ~ 13981885 (-)
G45206 NA non-coding downstream 225598 13911684 ~ 13972094 (-)
G45198 NA non-coding downstream 336247 13861235 ~ 13861445 (-)
G45197 NA non-coding downstream 336874 13860250 ~ 13860818 (-)
G45195 NA non-coding downstream 339575 13853897 ~ 13858117 (-)
G45270 LOC107692440 non-coding upstream 10623 14211366 ~ 14212986 (-)
G45271 sgip1,sgip1a,LOC107739126 non-coding upstream 13895 14214638 ~ 14216276 (-)
LOC122346673 NA non-coding upstream 63046 14263789 ~ 14279029 (-)
G45277 NA non-coding upstream 292378 14493121 ~ 14494022 (-)
LOC122346442 NA non-coding upstream 450973 14651716 ~ 14656031 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 4526 14160475 ~ 14193166 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other downstream 411789 13718202 ~ 13785903 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 516398 13655260 ~ 13681294 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other downstream 1299974 12525756 ~ 12897718 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 3128226 11055035 ~ 11069466 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 1126840 15327583 ~ 15330851 (-)
insl5a LOC107692440 other upstream 1288375 15489118 ~ 15490685 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other upstream 1334643 15535386 ~ 15685485 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other upstream 1403167 15603910 ~ 15605470 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other upstream 1555566 15756309 ~ 15765107 (-)

Expression


Co-expression Network