psmb3 (psmb3,LOC107688824,LOC102792592)


Basic Information

Item Value
gene id psmb3
gene name psmb3,LOC107688824,LOC102792592
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 7269271 ~ 7272477 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242920.1
AGTGACGTGAGCAGCAGGAACGACTAGCAGCGCTTGAAAGAAAGTGTGTAGTCACCGTGTGTAACCCGGTCTACGGCTTTCCAGCACAACAtaatcaaatcatatacatagtTTTCACATCGGGGcctgctttttacattttcagtcatGTCTATCATGTCATATAATGGAGGTGCCGTCATGGCGATGCGTGGTAAGGAATGTGTGGCCATAGCATCAGACCGGAGGTTTGGCGTCCAGGCGCAGCTGGTCACCACCGACTTCCAGAAAATCTTCCCCATGGGAGATAGACTCTACATCGGTTTGGCCGGCCTTGCCACAGATGTACAGACAGTATCTCAGAGGCTGAAGTTCCGCTTGAACTTGTATGAGCTGAAGGAAGGTCGTCAGATCAAGCCCAAGACCTTCATGAGCATGGTGTCTAACCTTCTGTATGAGAggagGTTTGGGCCATACTATATTGAGCCCGTGATCGCTGGTCTGGACCCAAAGACCTTTGAACCCTTCATCTGTTCCCTCGACCTCATCGGATGCCCGATGGTGACGGAAGACTTTGTTGTGAGTGGAACTTGCTCAGAGCAGATGTACGGCATGTGCGAGTCACTGTGGGAACCTGACATGAAAGCAGAGGATCTATTTGAGACCATCTCCCAGGCCATGCTGAACGCCGTTGACCGAGATGCGGTGTCTGGAATGGGAGTCGTCGTTCATGTCATTGAGAAGGATAAGATAACCACACGTACCCTGAAGGCCAGGATGGACTAAAGACAAATACTACTGCTGTTTCCTCTCCTGCAACCCCATTTTTTTGTACTCGAATAGAATTTGCCTCGTTCCATTTGTCATCACCAAGATTGAATtgttcaataaacatttctgatatTTACTCA

Function

symbol description
psmb3 Predicted to enable threonine-type endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome core complex, beta-subunit complex. Orthologous to human PSMB3 (proteasome 20S subunit beta 3).

NR:

description
PREDICTED: proteasome subunit beta type-3

GO:

id name namespace
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02735 PSMB3; 20S proteasome subunit beta 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242920.1 True 890 mRNA 0.48 6 7269271 7272477

Neighbor

gene id symbol gene type direction distance location
slc19a2 slc19a2,LOC107586324 coding downstream 8500 7254864 ~ 7260771 (-)
faimb faimb,LOC107709569,LOC107586372,LOC107688905,LOC107677619,LOC107562225 coding downstream 21155 7246256 ~ 7248116 (-)
ackr3b ackr3b,LOC107709570,LOC107586318,LOC107688828,LOC107677631,LOC107748917,LOC107596319 coding downstream 213425 7051184 ~ 7055846 (-)
mlpha mlpha,mlph,LOC107748571,LOC107586370,LOC107688909,LOC107596317,LOC107677617 coding downstream 249356 7010883 ~ 7019915 (-)
lrrfip1b lrrfip1b,LOC107688829,LOC107677622,LOC107596315,LOC107738309,LOC107748528,LOC107586315 coding downstream 258776 6983245 ~ 7010495 (-)
LOC122347322 zgc:162999,LOC107586326,LOC107562228,LOC107688822,LOC108438154,LOC107709582,LOC107677632,LOC107719292 coding upstream 60546 7333023 ~ 7337888 (-)
col18a1b LOC107709584,LOC107586328,LOC107688819 coding upstream 83871 7356348 ~ 7382805 (-)
LOC122346455 tns1a,LOC107688818,LOC107709585,LOC107562221,LOC107663075,LOC107586330,LOC107719294 coding upstream 113242 7385719 ~ 7388299 (-)
tns1a tns1a,LOC107688818,LOC107709585,LOC107663075,LOC107719294,LOC107586330 coding upstream 335996 7608473 ~ 7659200 (-)
LOC122347094 tns1a,LOC107688818,LOC107709585,LOC107719294,LOC107562221,LOC107663075 coding upstream 388987 7661464 ~ 7695119 (-)
G43251 NA non-coding downstream 446250 6815260 ~ 6823021 (-)
G43161 NA non-coding downstream 785878 5995956 ~ 6483393 (-)
G43173 NA non-coding downstream 1245761 6018440 ~ 6023510 (-)
LOC122346634 fmnl2,fmnl2a,LOC108273365,LOC108443439 non-coding downstream 1513807 5747766 ~ 5755464 (-)
LOC122346635 NA non-coding downstream 1521877 5745439 ~ 5747394 (-)
G43472 NA non-coding upstream 157301 7429778 ~ 7430446 (-)
G43478 NA non-coding upstream 188714 7461191 ~ 7498435 (-)
G43516 NA non-coding upstream 525647 7798124 ~ 7799697 (-)
G43528 NA non-coding upstream 583988 7856465 ~ 7857596 (-)
G43513 LOC107688815 non-coding upstream 776920 8049397 ~ 8050678 (-)
agap1 agap1,LOC107688827,LOC107709574,LOC107677621,LOC107748916,LOC107586321,LOC103044997 other downstream 24092 7108162 ~ 7245179 (-)
trim63a trim63a,murf1,LOC107586317,LOC105896535 other downstream 241844 7001115 ~ 7027427 (-)
G43248 pou3f3b,LOC107688836,LOC107559920,LOC107660107,LOC106574614 other downstream 441543 6804058 ~ 6827728 (-)
cacnb4b cacnb4b,LOC107566792,LOC107688838,LOC107748538,LOC107705621,LOC107660102,LOC107596307 other downstream 744321 6041876 ~ 6524950 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other upstream 2363 7274840 ~ 7314774 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other upstream 44470 7316947 ~ 7329565 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other upstream 307418 7579895 ~ 7586367 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other upstream 464613 7737090 ~ 7770451 (-)
G43514 spega,LOC107731772,LOC107688815,LOC107586363,LOC107719300 other upstream 774625 8047102 ~ 8048008 (-)

Expression


Co-expression Network