tgfa (tgfa,LOC107712107,LOC107721172,LOC107673622)


Basic Information

Item Value
gene id tgfa
gene name tgfa,LOC107712107,LOC107721172,LOC107673622
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20057630 ~ 20067203 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242936.1
GGTGTGGAGAGGTTTCTGTGATAGGAGTGATTGTTAGTAACGTGGTTTTGTAGTTGACAATGTTTAACCACTGATCTTTATCGTGATAGCGAAttagaaattaatatatatatagttgggGCTTTATATGACGTCAGTGGTAAAACGGCGTTGCTCAAGTTTGACGTCAAGTTCAAAATACCTGAGTCGACGCATGGCGTCTTTTGTCGAGTAGGACACATGAAACTATGAAGAAAGACGTGCACGGTTTTACTACGGAAGTCAGATGTCTCACCTATGCAACGGACTGTCAATAATATTGGCCAATCTAAAGAATACGAGCGTGCCTTCATCTATGTTGGcaaagataaatgttttaatataacagACGACGCTGCGAGTCCTTCACCAGCAAGTCACATAAACGCCTTATAATGATGTATCGTGCTTTTTGGGATACAATATTCCTTCTCACCGGCTCGCTTTTTACATATGGGCAGGTGCAAGAGAATTCTACCTCAACAACGACCATTGCAACCACCACCACAACAactaccaccaccaccacaacaACCACCACCAGCACGACGACAACCACTACTACTACACGTGTCAAAAAATTTATAGCAGCCGCTGTCCACTCTCACTTTGATGACTGCCCCGACTCCCACAGCCACTTCTGTTTTCACGGCACATGCCGCTTTCTCATATTGGAGGAAACGCCTGCATGCGTATGTCATCCTGGCTTTGTGGGTATGCGATGTGAACATGCAGATCTCTTGGCTGTGGTGGCGTCTAACCACAGGCAGCAGACTGTGGCCACCATGCTGGTGTTGTGTGTGGTGGGCAGTGTTCTGCTCATGCTGCTGTGCACTTTACTAAATTGTTGGTGGAGACGGGGTGGTTGTGGGCGAGGTAACACCATTTGGTGTTGGTCGGAGAAGCCTAGGAGTATTCTGACGGGTGGGACATCCTGCTGTAACTCAGAAACAGGTATTCTGGTGctacatttccatttttacaCAACTTTTTGCTGAGCTGTAGTGTCATGTGTTAAGTGTCATGCAGTGTCTAATTATGATCAGCAATAGGGGGTGTTTGCATACCGAGACCAGCATATGTGTGAGGCCTTTAACTTTTAATGGCCTATGATTTGTCTTTGCTCAAGGGTTTAAGCTGTTAGTTTAGCCATCTGCTGTCACTCTGACTTAAGACTGTCAATGATCATGAGACTAATAGTTGGTCGTAGTGAAACATAGGCTAATAAAATTTGTAGCGC
>XM_043242937.1
GGTGTGGAGAGGTTTCTGTGATAGGAGTGATTGTTAGTAACGTGGTTTTGTAGTTGACAATGTTTAACCACTGATCTTTATCGTGATAGCGAAttagaaattaatatatatatagttgggGCTTTATATGACGTCAGTGGTAAAACGGCGTTGCTCAAGTTTGACGTCAAGTTCAAAATACCTGAGTCGACGCATGGCGTCTTTTGTCGAGTAGGACACATGAAACTATGAAGAAAGACGTGCACGGTTTTACTACGGAAGTCAGATGTCTCACCTATGCAACGGACTGTCAATAATATTGGCCAATCTAAAGAATACGAGCGTGCCTTCATCTATGTTGGcaaagataaatgttttaatataacagACGACGCTGCGAGTCCTTCACCAGCAAGTCACATAAACGCCTTATAATGATGTATCGTGCTTTTTGGGATACAATATTCCTTCTCACCGGCTCGCTTTTTACATATGGGCAGGTGCAAGAGAATTCTACCTCAACAACGACCATTGCAACCACCACCACAACAactaccaccaccaccacaacaACCACCACCAGCACGACGACAACCACTACTACTACACGTGTCAAAAAATTTATAGCAGCCGCTGTCCACTCTCACTTTGATGACTGCCCCGACTCCCACAGCCACTTCTGTTTTCACGGCACATGCCGCTTTCTCATATTGGAGGAAACGCCTGCATGCGTATGTCATCCTGGCTTTGTGGGTATGCGATGTGAACATGCAGATCTCTTGGCTGTGGTGGCGTCTAACCACAGGCAGCAGACTGTGGCCACCATGCTGGTGTTGTGTGTGGTGGGCAGTGTTCTGCTCATGCTGCTGTGCACTTTACTAAATTGTTGGTGGAGACGGGGTGGTTGTGGGCGAGGTAACACCATTTGGTGTTGGTCGGAGAAGCCTAGGAGTATTCTGACGGGTGGGACATCCTGCTGTAACTCAGAAACAGTGGTTTGACCTCCGTTTTCTGGAGCTCACGCAGGTGCTCTCTTAAAAATGAGACCACAAAATCTTCCATCTTACTCTTGGACTTCGCCTTGACTGCGTTTCTTAGGCTGGTACAGCTGGTAAGCGCAGCACGTATTGAGAGCATTTCAATGTGAGCAGTGAGAGAACTCCGTCAAACGTGTAACCTTACGATCAGACAGACAGTGTCATTCCAACAGGAAATTTTTGGAACAACAGCAGCAATGACAAGAGTTAAAGATGGAACTGAGAAACTCTAAAAGAAGAACTCATAACAAGCTACATGGAACTCAACTGCAGGATCCAGTGATGTTAGAAAGGGCTGTTTTCAAATAAGGTACAGATCGATGGCCAAAACTGATATGGAAGTAAAAAGTATGTGAGAAGTTTTAGAGAAATCATACTTACTAACAAAGCTTATCTTAAAGCTATAAATATCGCTAGAGATGTATAAGAAAACACTCTCccagtttttgtcttttaaaatactcttataatatgaaaaacactaatattaCGCCATTAATGGGATGTGAAACTCAATAAAAAGTAGtgtaatatatactttttaacaaGAATATAATATCACATAATTTTCTGTATAACGTTAATGGATAAAGAATGGGAGATAACTTAACACTGAAGTCAGTCAGGTAGcatgtaatattaaaactataacAGACTCTTTTgccaatttattttagcttgatCTCTTTataatgttgatttaaaaaaaaaaaggtaaacaacCTTCATAGATTAACTCCAAACATGAGATACTCTGAGGGACAAATAATATCTTTTACACATtattaacacttaatttttttaaatgtttttttttgtaaaaaaaaattaaaaagtcacaattttgACATGTAGCTTACTAAGTTATGCATAGATTCACGAATTCAACATAATACGTTCTTCAGGCACAAAACGTGTTCGTTCATATAATGTGCTATCAAAGATTTGTCAACATCAGCAGGGTAAATGCTTGTAAACAGCCTCTGTATGTTCACTTACGGAATGATTGGATGCATGCGTGTCTGatcacataattacatttatttcacgGCGCACTTCTGTGgtgaacattaaaaacacattgtgaATACAGTCACGTTAGATCTGCACTTAAGTTTTCCATGATAGATGTTTGGTGTAATAAATCacttgagaaataaaaaaacacttcactgTATCCTAAAGTGCACCATTCTCATGATTATTGGGGAACACGTATGCATACAGAGGCTCAATACtgatattattacatttgatgCACATTGTCCTTATTAAAGTATGCTTGGAAGatttattgaaatttttacactgaaatattttaatccaTATGTTAATTTTGTTCTCATTGTCTGTTCTGTCCCAAGCTTTTGCCAATATAATGTTCTAAAACAAATGTGAATTGACCCATAAGGTCAGagggtttatatatttttattttggaataaaatatgGCATTGTATGTTTTACTCAATCAAAACCCCTCTCGGAAACTGACAAATGACTGAtctagtacaaaaaaaaaaacagaagaaaatgatTTGGTGGGCTTAGATTTGGCCGTGTTCTGTTATGAGATTGTGAAAGCATTTATTGAAGTCTGATCACTGTGTGAAGATCCatgaaatatttgatataatgaTCCCAAAAGTCATCCAAGTGATAAATTAAACACTTACGCTGTTAGCATGGGCAACATTTGAGTTATTGTCTGTGAATGATTTTGATCAGCCTCATGTGTAACTTAATTATAAAAACGTATTATATAAACTAACAAATATGATTGTATAAGGACTGAGtataacatttatgaaaaatgagagaaaagaaaatgtatgtaattgAGCGTTAAATCTCAGATTTATcagatgtaatgttttttttttgttttggtctttaTGAGAGTACTTGggttaaaaaggtaaaataagcTTTGGACATTTCGGACTGAACAGTTTTGTAACGTGCAGTCATTGCATAATTTCCAGATGTGGAATTTCAGTCATCTGTAATGATGTTGTCACACTTAGACTAACAGATGAACTGGCCTAGAGATGATGCTCGGAAACCGAATCCTGTTTAAACCTGGTTAACTGCTTATTGACTGACATTTATGTATGATAAACTGTAAACACCGCCCATCGTCTTTAAAGTACTGTGTTGTTTCATGTTGGGAAAAATGCTTTGTAAATAATGTGTGGGAATATTATTTTGGTTGTACTGTATATGGAGAATGAGGTGTTTTCTTGACTATCAGTCAAGCATGAAAGTAAGAGTTACGTGATTCCAATAAGACCGTCACATGCTTGGCTGACATTTTGTTGAGTGTTTTGACCTCTTTGTCTAAGTTTgcatatttttccaaatatcaCAAAGTGCGGCAAATTTTTGACTGGACC

Function

symbol description
tgfa Predicted to enable epidermal growth factor receptor binding activity and growth factor activity. Predicted to be involved in several processes, including epidermal growth factor receptor signaling pathway; positive regulation of epidermal growth factor-activated receptor activity; and positive regulation of mitotic nuclear division. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in diencephalon; midbrain; retina; and third ventricle. Human ortholog(s) of this gene implicated in gastroenteritis and pancreatic cancer. Orthologous to human TGFA (transforming growth factor alpha).

NR:

description
protransforming growth factor alpha isoform X2

GO: NA

KEGG:

id description
K08774 TGFA; transforming growth factor, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242936.1 False 1258 mRNA 0.45 5 20057630 20063773
XM_043242937.1 True 3412 mRNA 0.37 6 20057630 20067203

Neighbor

gene id symbol gene type direction distance location
patz1 patz1,LOC107568192,LOC107712103,LOC107584420,LOC107721193 coding upstream 7604 20039194 ~ 20050026 (+)
eif4enif1 eif4enif1,LOC107673519,LOC107584417,LOC107667360,LOC107568191,LOC107712102 coding upstream 19133 20026927 ~ 20038497 (+)
c6h1orf74 LOC107712101,LOC107584438,LOC107568182,LOC107721171,LOC107667327,LOC107673551 coding upstream 51670 20004804 ~ 20005960 (+)
ruvbl1 ruvbl1,LOC107673590,LOC107721190,LOC107568195,LOC107667375,LOC107712098,LOC107584430 coding upstream 58502 19995035 ~ 19999128 (+)
gata2b gata2b,LOC107712071,LOC107673559,LOC107584431,LOC107721170,LOC107667331,LOC107568181 coding upstream 74887 19977071 ~ 19982743 (+)
entpd8 entpd8,LOC107673470,LOC107584429,LOC107712074,LOC107667330,LOC107567076,LOC107736630 coding downstream 11393 20078596 ~ 20084856 (+)
fkbp5 fkbp5,LOC107673486,LOC107712109,LOC107667344,LOC107721196,LOC107584436,LOC108413698,LOC108271732 coding downstream 38219 20105422 ~ 20115234 (+)
slc6a22.2 slc6a13l,LOC107673491,LOC107712076,LOC107567081,LOC108436256,LOC108271591 coding downstream 59712 20126915 ~ 20134109 (+)
LOC122347149 opn1mw3,LOC107673490,LOC107658029,LOC107712112,LOC107567080 coding downstream 80891 20148094 ~ 20149641 (+)
LOC122347125 opn1mw4,LOC107584449,LOC107712111,LOC107673490 coding downstream 86291 20153494 ~ 20155158 (+)
G46755 NA non-coding upstream 31762 20025589 ~ 20025868 (+)
G46754 NA non-coding upstream 35069 20022283 ~ 20022561 (+)
G46753 NA non-coding upstream 35921 20021184 ~ 20021709 (+)
G46752 LOC107712061 non-coding upstream 38328 20018829 ~ 20019302 (+)
G46751 NA non-coding upstream 38951 20018315 ~ 20018679 (+)
G46766 NA non-coding downstream 4721 20071924 ~ 20073643 (+)
G46768 LOC107567077,LOC107712063,LOC107721195 non-coding downstream 53556 20120759 ~ 20122901 (+)
G46841 NA non-coding downstream 105748 20172951 ~ 20173899 (+)
LOC122346368 NA non-coding downstream 153903 20221106 ~ 20226998 (+)
G46848 NA non-coding downstream 212740 20279943 ~ 20287158 (+)
slc6a11a slc6a11a,LOC108440580,LOC107673588 other upstream 184095 19866559 ~ 19873535 (+)
LOC122347202 uqcc2,cf125,LOC107580205,LOC108440614,LOC107667355,LOC106565356 other upstream 211082 19843047 ~ 19846548 (+)
ghrl LOC107585199,LOC107711011,LOC107673481 other upstream 271333 19784177 ~ 19786297 (+)
itpr1a itpr1a,LOC107748403,LOC107711046,LOC107673508,LOC107585177 other upstream 463622 19566011 ~ 19594008 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other upstream 710001 19262584 ~ 19347629 (+)
G46742 NA other downstream 19888 20087091 ~ 20095641 (+)
LOC122346811 rad18,LOC107673612,LOC107657944,LOC107567093,LOC107584494 other downstream 564767 20631970 ~ 20661207 (+)
LOC122347404 rad18,LOC107673612,LOC107657944,LOC107567093,LOC107584494,LOC107712119 other downstream 653214 20720417 ~ 20749398 (+)
oxtra oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 707795 20774998 ~ 20786533 (+)
G47187 cpt1b,LOC107559523,LOC107710383,LOC107686536,LOC107671150,LOC107599889 other downstream 1708205 21775408 ~ 21777713 (+)

Expression


Co-expression Network