LOC122347578 (LOC107678224,LOC107752100,LOC107581387)


Basic Information

Item Value
gene id LOC122347578
gene name LOC107678224,LOC107752100,LOC107581387
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18763245 ~ 18765483 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242960.1
AAACATGGCGCGTCACAGTCTTTGTTTACAGGTCTGCCTTTTAGTCTTGAGAACGTATTTTAACATCCaaagtaatttaattcaatgtctTTATGCCGTCCAACGACAATGTCATAGACAACGTCTACGCTCAAGACGACAGattGCTTTGGTTATCATGAGAAGACGAACATCTGCTGTGTGGTCCTATCCTCGAGAGCACAAGTGGTGGGATACCATTGTCCCTGCATTCACTCCAGAACAGTTCATCCAGAATTTCCGGGTCTCGCGGGAGTCTTTTGAATACATCTGTTGTCGTCTCAGGCATGTACTTCAACGAAGGAACACCAATTTCCGTTTGTGCGTACCTTTGAAAAAACGAATTGCCATTGCCCTTTGGAAGCTTGCCACTGGCAGCGAGTACAGAAGTGTCAGCCAGCTTTTCGGGGTCGGCGTGAGCACTGTATTCAACTGTGTGCAGGACTTCTGCAACGCTGTAATAAAAGTTCTTCTGGCTGTACACGTTAAATTCCCAGATTCTACAAAGTTGAAGGAGATGGCAGATGTTTTCGAAAGTGGCTGGAATGTTCCTCAGTGTGTGGGTGCAATAGATGGAAGCCACATTCCAATAATAGCGCCTGAAGATTACCCTCGTGACTATTTTAACAGGAAGGGGTGGCATTCAATAATAATGCAAGCGGTAGTGGATGGCAAAGGGCTTTTCTGGGATTTGTGTGTTGGCTATCCTGGGAGCGTACATGATGCCAGCGTCCTAAAAGAGTCTCATTTGTGGAAGATGTTGAACGATGGACACCCGTTAAACCAAAGCAAAGTGCACATCTCTGGTTCTGATGTTGGATACTACTTGATTGGAGACTCAGCCTATCCCTTGCAAAAGTGGCTGATGAAACCATTTGCGGACACGAGCAGTCTAACCCCACAGCAGCAGAGGTTCAATCTCAGGCTGAGCAGTGCAAGGTCGGTTGTGGACTTGAGTTTTGGAAGGCTAAAGGCAAGGTGGAGGTGTCTCTTAAAGAGGAATGACTGTAAACTGGAGCTGATAAAGAAGATGGTTTTGACCTGCTGTGTGCTACACAATATCTGTGAGGAACGCGGAGACCGCTTCAGCGAAGACCTTTCGGCCATCCATGTGAACATGCAGCCTCCCGTTCAAGCATTAACAGAGCACGGACGACCAGAAGGGACGGATGTACAAGCGGCATTATTAGACTACTTCAACAGACAGGACAGTGAAATTATACAAGGAGCAGTTTAATTTGTATCactttttctattgttttattttttagatggTGTTTTTTTCCAAGAAATGTTCCACAATTGATGTATATAgatttattataaagtaattgcaataaaaaaaaaaataca

Function

NR:

description
PREDICTED: putative nuclease HARBI1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242960.1 True 1371 mRNA 0.44 2 18763245 18765483

Neighbor

gene id symbol gene type direction distance location
LOC122346645 LOC106676354,LOC106674584,LOC106676400 coding downstream 19129 18743065 ~ 18744116 (-)
LOC122346546 dtd1,LOC107752123,LOC107678219,LOC107660112,LOC107753913,LOC107551933 coding downstream 57513 18702854 ~ 18705732 (-)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289,LOC107582724 coding downstream 274371 18458127 ~ 18488874 (-)
LOC122346396 gabrg3 coding downstream 307458 18363838 ~ 18455787 (-)
nipa1 nipa1,LOC107716965 coding downstream 555611 18205651 ~ 18207634 (-)
LOC122346582 LOC107584426,LOC107673614,LOC107712092 coding upstream 220567 18986050 ~ 18988440 (-)
cnga3a LOC107585144,LOC107711084,LOC107673541,LOC107685324,LOC107733584 coding upstream 305922 19071405 ~ 19078891 (-)
hdac7b NA coding upstream 348195 19113678 ~ 19123976 (-)
tns2b LOC107711076,LOC107673525,LOC107585141 coding upstream 387556 19153039 ~ 19173171 (-)
eif4bb eif4bb,LOC107673526,LOC107711078,LOC107585139,LOC107582715,LOC107733597 coding upstream 410383 19175866 ~ 19187427 (-)
G46432 LOC107752101,LOC107678225,LOC107581302,LOC107551936,LOC107753899,LOC107672678 non-coding downstream 810 18761584 ~ 18762435 (-)
G46421 NA non-coding downstream 42077 18656842 ~ 18721168 (-)
G46412 sec23b,LOC107678217,LOC107752097,LOC107581388,LOC107551934,LOC107753900 non-coding downstream 76421 18603991 ~ 18686824 (-)
LOC122346470 NA non-coding downstream 119892 18642722 ~ 18643353 (-)
G46172 NA non-coding downstream 403264 18359679 ~ 18359981 (-)
G46439 NA non-coding upstream 92229 18857712 ~ 18858471 (-)
G46444 NA non-coding upstream 117369 18882852 ~ 18886400 (-)
G46463 p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396 non-coding upstream 204687 18970170 ~ 18972370 (-)
G46476 NA non-coding upstream 278133 19043616 ~ 19043869 (-)
G46477 LOC107673579,LOC107711085,LOC107585184,LOC107733604,LOC107685287,LOC107579827 non-coding upstream 279145 19044628 ~ 19048836 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other downstream 45757 18714174 ~ 18717488 (-)
LOC122347235 NA other downstream 55649 18706623 ~ 18707596 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other downstream 118111 18644306 ~ 18645134 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 989138 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 1349106 17382327 ~ 17414139 (-)
G46478 NA other upstream 289663 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 349578 19115061 ~ 19149731 (-)
tsfm tsfm,LOC107711018,LOC107585120 other upstream 787834 19553317 ~ 19555942 (-)
tomm6 NA other upstream 1075996 19841479 ~ 19842994 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other upstream 1077561 19843044 ~ 19847432 (-)

Expression


Co-expression Network