parp3 (parp3,LOC107749614,LOC107750280,LOC107658076,LOC107673445)


Basic Information

Item Value
gene id parp3
gene name parp3,LOC107749614,LOC107750280,LOC107658076,LOC107673445
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20800094 ~ 20805651 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242971.1
AACGGCCGAGCAACTGTTGTGACGTTGACGTTCACTCGCTCAGAAACGCGGAAGTCAGGCTGCAGACAGTCAGAGTGAATCTGCAAACTTTGACAGCGCAGTCACTAGCCGagaggaaagagaatGGCACCTAAGAGAAGGGCGACATCAAGCACCAAAGCTGGAGGGAAGAAGGTAAAGGAGGAGCCTGTAGGACCCCCAAAAGACAAGTTCACCTCTGCCAAAGAGGCTCTAAAGGCAACAGTGCCACAGGTGACGGGCACGAGGAACCCAGACAGTCTCTGTCATCTATCAAATGCTGAGGTTCACGAAGATTACGACTGCATGCTAAACCAAACCAACAttggaaacaacaacaacaaattctATGTCATCCAAGTCTTGGTGTCTGGAAGAAAGTACTATTGTTGGACAAGATGGGGCAGAGTGGGAGAGTCAGGACAAAACAATTTAGCCGGCCCGTCTACTGCTGATGCAGCCATTAAgaattttgaaaagaaattcaAAGATAAGACCAAGAATAACTGGAGCGACCGTGAAAACTTTGTGTCATATTCTGGGAAGTACACATTGATAGAAGTAGACGGAGACCAGGATGCAGAAGTGAAGGTGGACACTGTAGATGGTGGCGATGTGAAGGTGAAAACTGAACAACATGTTCTGCCTTGTACATTGGATGGGGCAACTCAAAGACTCATCCGATTCATATTTGACAACGACATGTTCAAAGAAGCCATGACCAGCATGAACCTGGATATTAAGAAGATGCCCTTGGGGAAACTCAGCAAGCAGCAGATAGCCAAAGGCTTTGAGGCTTTGGAGCAGATTGAAGCTGCAATACAGAAAGGGGAACGGAACAAGTTAGAAGAACTCACCAACAAATTCTTTACCATAATTCCTCATAACTTTGGCCGAAACAGACCCCCTATCATCTCTGATGATTCTGTCCTTCAGGGCAAGAAGGAGATGCTTTTGATTCTTGCAGACATTGAGATTGCCCAGAGTCTTAAAGCTGAATCCGAAAAAGCCAAAGAAGAGATGAAGGACACAGTGCCACATCCAGTTGACCAAAATTACCAGTCTCTGAATTGCAAGCTAAGCCTAATGGATAAGAAGTCAAAGGAATATAAGATTATTGAGAAGTACTTGAATGCCACCGGAAGAAATGGAATCAGTTTGGTGGACGTCTGGGAAGTTGACAGAGATACAGAGGCTGAACGCTTCAGGGAAAATGATGCATTGGAGAACCGGAAGCTGCTTTGGCACGGAACAAACGTGGCAGTGGTCGCAGCCATTCTGAAGAGCGGCCTTCGCATTATGCCCCATTCTGGTGGACGTGTAGGCAGGGGAATCTATTTTGCCTCTGAAAACATCAAGTCTGCCGGCTATGTGTGTCCATCCAACAACATTGGCatcatgtttctaaatgaagTTGCTTTGGGAAAAGAGCACACCATCACGCAGGATGATTGCAGCCTAAGGAAGGCTCCCGCTGGCTTCGACAGCGTAGTTGCACGTGGAAGCCAAGAACCAGATGCCTCAAAAGATGTCTTCATTGAGTTGGATGGTAAAAAGGTGGCAGTTCCTCAGGGAAAAGCCATAGAACAACAGCAGTACAAGGGAAGTTCATTTTTCAACAGTGAGTACCTCATCTATAAGGAAAGCCAGTGTCGCATCCGGTACCTCCTGGAACTGAAGTTCAGCTATTAGAGCTGATTTGAAAACCTGGAATTGTATAGAGTTATGCATATAGCCACTTGTAAATGTCACTTCTGCTAAGTGGTTTCACTCTCACTTATAAAGCGTTTAgttataatcattattttataataattttcttattattaacattactgTTATTTTGTTAAGTTGAATgttaaattgtgatttttgtgtgGATACAGTTTAGCAATGGTATTTTGATGGTTCCTCTGTTTGAGTCAGAAAGACTAATAAATAGTTCATctataaattacacttttattatataatgtaaacttgGTCATTAAAGACAGTATGTTTGCTAATTTTGCCTTCTCCCTGAGAGTTGAATGTCTTCTTATGATTACTTTTCTGTAACTGACAGGTTTTTCATATTAGAAACATAACTGTGAGTCTTTCTTGAAAGTTAATGTTcacctttaaatatttaaaaaagttgaaTCATTGTTCAACTagataaaaataacaaagatGAAAAATGCCAATAAGAGTATTTAACAAAATACTTTTGTGATTAAAgccattatattatatattttctatatattttcaaatttcttTTAGTCGTTTCTCATTCAAGTTAAATTTAGACAAGCTGCTCAAACATTGCTGACAAGCACAGATTATGAAGGATGTATAACACTAAAGTAACTCTTTCTAAACAGTTTTTGGTCAGATATttcttttgattgtttttattcagttatattGCACTATAAagacaatatatattatattatataatatatatgcactATAAGGATAtgtccatatatatattatatattttttctctgatATGTAATGATTATGGTAAGCATTGAAGTTAAGttgtattgtaaatgttaatgtgGGTTAATctgaacataataaataataaatgttattatataaataa

Function

symbol description
parp3 Predicted to enable NAD+ ADP-ribosyltransferase activity and protein ADP-ribosylase activity. Acts upstream of or within ectodermal placode development and regulation of neural crest formation. Predicted to be located in nucleus. Predicted to be active in nucleolus and site of double-strand break. Is expressed in axis and notochord. Orthologous to human PARP3 (poly(ADP-ribose) polymerase family member 3).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0090299 regulation of neural crest formation biological_process
GO:0006471 protein ADP-ribosylation biological_process
GO:0071696 ectodermal placode development biological_process
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG:

id description
K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242971.1 True 2620 mRNA 0.39 11 20800094 20805651

Neighbor

gene id symbol gene type direction distance location
gpr61l LOC107658083,LOC107750281,LOC107749617,LOC107567083,LOC107584511,LOC107673479 coding downstream 943 20795246 ~ 20799151 (-)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282,LOC107658089,LOC107577493,LOC107673475 coding downstream 13539 20782444 ~ 20786555 (-)
hemk1 LOC107750260,LOC107712066,LOC107657999,LOC107567089,LOC107584453 coding downstream 368917 20423711 ~ 20431177 (-)
LOC122347299 LOC107683669,LOC107709781,LOC107701556,LOC107709782,LOC107704729,LOC107585716,LOC107739789,LOC107585717,LOC107585718 coding downstream 561434 20237274 ~ 20238660 (-)
slc6a22.1 slc6a13,LOC107584422,LOC107567077,LOC107721195,LOC107712063,LOC108413697 coding downstream 674833 20116875 ~ 20125261 (-)
grm2a grm2a,grm2,LOC107673619,LOC107657935,LOC107567094,LOC107749615,LOC107750271,LOC107584497 coding upstream 1112 20806763 ~ 20841391 (-)
tex264a tex264a,LOC107584457,LOC107749613,LOC107673607,LOC107750253,LOC107657929,LOC107567068 coding upstream 37205 20842856 ~ 20900191 (-)
fancd2 fancd2,LOC107750252,LOC107749611,LOC107573736,LOC107584458,LOC107666962,LOC107673444 coding upstream 94718 20900369 ~ 20915278 (-)
usp4 usp4,LOC107584456,LOC107667006,LOC107573741,LOC107657902 coding upstream 112687 20918338 ~ 20931314 (-)
emc3 emc3,LOC107667035,LOC107584459,LOC107657885,LOC107750250,LOC101173295 coding upstream 126410 20932061 ~ 20935193 (-)
G46934 srgap3,LOC107657972,LOC107712067,LOC107750258,LOC107673571 non-coding downstream 93245 20564351 ~ 20706849 (-)
G46922 NA non-coding downstream 107931 20498222 ~ 20692163 (-)
G46929 srgap3,LOC107657972,LOC107750258 non-coding downstream 200959 20554033 ~ 20599135 (-)
G46883 LOC107673597,LOC107712118,LOC107584452,LOC107567071,LOC107657992,LOC107567092,LOC107750261 non-coding downstream 377364 20419765 ~ 20422730 (-)
G46881 twf2,wdr82,LOC107712117,LOC107673495,LOC107750262,LOC107567090 non-coding downstream 380499 20360821 ~ 20419595 (-)
G47004 NA non-coding upstream 129771 20935422 ~ 20935654 (-)
LOC122347045 gnat1,LOC101072412,LOC107750245,LOC107657824,LOC107385205,LOC107666988 non-coding upstream 331822 21137473 ~ 21142766 (-)
G47122 zgc:113054,LOC107584471,LOC107713510,LOC107666963,LOC107750276,LOC107599438,LOC107680730,LOC108424032 non-coding upstream 522781 21328432 ~ 21329671 (-)
G47262 LOC107573738,LOC107657877,LOC107713495,LOC107666997,LOC107750247,LOC108436274 non-coding upstream 796638 21602289 ~ 21663492 (-)
G47283 NA non-coding upstream 994627 21800278 ~ 21801032 (-)
G46926 NA other downstream 268260 20529179 ~ 20531834 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other downstream 633815 20161440 ~ 20166279 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other downstream 697635 20096024 ~ 20102459 (-)
mustn1a mustn1a other downstream 799456 19998632 ~ 20000638 (-)
LOC122347177 LOC107584418 other downstream 843364 19899672 ~ 19956730 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 542968 21348619 ~ 21355381 (-)
tardbpb tardbp,LOC107713527,LOC107555974,LOC107666995,LOC107680706,LOC107561006 other upstream 1934321 22739972 ~ 22750947 (-)
G47535 LOC102793276,LOC101471251,LOC100701884,LOC102312415,LOC102199361 other upstream 2316132 23121783 ~ 23163157 (-)
G47590 NA other upstream 2593698 23399349 ~ 23400502 (-)
LOC122347542 grm8b,LOC107659486,LOC107698172,LOC107752348,LOC107575719,LOC107598887,LOC107753676 other upstream 2847538 23653189 ~ 23656456 (-)

Expression


Co-expression Network