cacng1a (cacng1a,cacng1,LOC107586374,LOC107688902,LOC107716892,LOC107569457)


Basic Information

Item Value
gene id cacng1a
gene name cacng1a,cacng1,LOC107586374,LOC107688902,LOC107716892,LOC107569457
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 8183015 ~ 8188384 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242974.1
CTCTCAGCATAAATACTAGGACACTGTCATTTGGCTCCTTTTATCCATGCGAAAGCACAGTGCTGCACAGACACCTTAAGAATCAAGAACAACCTGGACCAGGTCTCCGTTCTAAACTCTTCTGATATTCCCGTTTTACTTCATTAGATATTTCcgtatcatttttttgttttattcgtCCGTTAGAAGTGGATTCTGGACAAAATGCAGAAGGAAACCAAGacaaaaatcttgttttttgtgCTGTTGGTGGGCTCAGTCTGCATGCTAACAGCGGTGGTGACAGACCACTGGGCCGTGTTGAGTCCTCGAGTGGAGAACGTAAACACAACATGTGAAGCAGCCCACTTTGGCCTTTGGAGACTTTGTAAGAAACACATCTATATTGAGGATGAGGAATTAATTGGTAAAGGGTGTGGACCTATCAGTTTACCGGGGGAAATGAACTGCTCTTATTTCAGACACTTCACGCCAGGGGAAGATTCTGAGATCTTTGAAGTTAAAACTCAAAGAGAATACAACATCTCAGCAGCTGCCATAGCCATCTTCAGTCTTGTCTTCATGATCCTGGGCACACTGTGTGTGTTGGGTTCCCTCAGAAAGGGAAACGACTATCTATACAAGCCTGCCGGCATGTTCTTTGCTTTTGCAGGTCTGTGTGCTATCATCTCAGTAGAGGTAATGCGTCAGTCAGTCAAGAGGATGATAGAAAGTGAGGACACTATCTGGATCGAGTATTACTATTCCTGGTCTTTTGCGTGCGCATGCACGGGCTTTGTCCTGCTCCTCCTCAGTGGAATTGGTCTGCTGCTCGTCTCCATGCCACAGATGCCTAGAAATCCCTGGGAGACCTGCATGGATGCCGAGCCTGATCAGATATAGAGCAGGAATTCCAGATGTCTGCAGGTAAACCACTGTCTCAAAACATATCTAGACCTCTTACAATGTCAGAGCTTGACAAGCAGAGGTCATCAAATTGGCTCAgtaactttttttcccccccttgcGAACTGGCACTGTGTGTTACGCACCCTTTTACATCCAACCTCGCCAGCAAGAAGCCAAGCTTTTCcatctttatattattaattacatatatgtaacatttaccatcctaaatgcataaaatctCTGAGAGGAGTGCAGCTGGTGTTATGTAGTTGGAACTTTTGTGTAATAATGCTGTACATTAACAGACACACAAAGAACGTTTAAGACAATGGGATGGTTTAAATGGAGAAGTGTTGCAGAAGAATTGTGATTGTTAGCGTGAAGGATTGAAAAATTATTAACATCTGACTAGCATATGTTCAGATGCTGATGTAATTAGAACGTTCATCTGCACTAATTTGCAGGCAGTGGATAGTGCAGTGATGTAAAACCACAAGATTTTCCTCTATAAAGCATAAATCATATcctgtaaatgatttattttcttttttaaaaaatgtgtgaatgCTGCTTTGGCTTTGTGCTTAATAAATCTCCTTTTATTGATAGCCATTTCAACAGTAATCTTCTTCTGCCTGGACACAGTGATGCTCTCAACTGCTCTGAGCAGAATGCAAATGTTTGGTCTGCTGTGGTTGCTGAATGCTTGGCCAgacattttggaataatttcAGATCTAGCAGGTGCGAAGAAAATGGCATCGATTTCGCCCTTATGCGAAACGTTAAAAGTATTCTGAGACTCTCCGAGTCTAGTTTCCACAAATGGGTTTCCAAGCTTGAAATGGATTGGTGTGCTCAATATTACAATAGAGAACAATGAGCTAATTTATGATCCTCTCAGGAACTGTGGTCATTTTTGGGTCTCAACATCCAGTTTATGTATCCAGTGTGTAGAGCGGAAAAAATCTTCACCATATTTCTGGGTGGTGATTTATCCTGTGTGTATAAAAAAGATCTAAACATCAAATGTATTGCCTATTTGAATAAGCTATACATACTATAGAAGCTTTTAAACTTAAAGCTTATTGAGCTTTACAAGTCTTATTAGACCCGGTTcctcaaaaatctttttttaataaagttgaTTTAGAACGTGGGGATTGCTGTCAGAGCCATAGCTTTGTGGGCGGTTCGAGAGCCTGCTTGTTTGTGGTCCTTTAGTATTCTTCTATTCTCTCATCTCTCCTCTCAATTCCTGTCATTGGCAttgctaaaaaaacacatggatGAGAATATCACCACATGCTGAGGCACATtcataaaattgtttaattgatTATAGTAGATGGTAGACAAACCTTGTAATTATATCAAAGATGTTTGGATCACGTTATGCTGTCCAgcagaataaatgtatttctggtATTACAACCCTATGTCatgtatttctaataaaaaaagtaagctAACTCCCA
>XM_043242975.1
TCTCTCAGCATAAATACTAGGACACTGTCATTTGGCTCCTTTTATCCATGCGAAAGCACAGTGCTGCACAGACACCTTAAGAATCAAGAACAACCTGGACCAGGTCTCCGTTCTAAACTCTTCTGATATTCCCGTTTTACTTCATTAGATATTTCcgtatcatttttttgttttattcgtCCGTTAGAAGTGGATTCTGGACAAAATGCAGAAGGAAACCAAGacaaaaatcttgttttttgtgCTGTTGGTGGGCTCAGTCTGCATGCTAACAGCGGTGGTGACAGACCACTGGGCCGTGTTGAGTCCTCGAGTGGAGAACGTAAACACAACATGTGAAGCAGCCCACTTTGGCCTTTGGAGACTTTGTAAGAAACACATCTATATTGAGGATGAGGAATTAATTGGTAAAGGGTGTGGACCTATCAGTTTACCGGGGGAAATGAACTGCTCTTATTTCAGACACTTCACGCCAGGGGAAGATTCTGAGATCTTTGAAGTTAAAACTCAAAGAGAATACAACATCTCAGCAGCTGCCATAGCCATCTTCAGTCTTGTCTTCATGATCCTGGGCACACTGTGTGTGTTGGGTTCCCTCAGAAAGGGAAACGACTATCTATACAAGCCTGCCGGCATGTTCTTTGCTTTTGCAGGTCTGTGTGCTATCATCTCAGTAGAGGTAATGCGTCAGTCAGTCAAGAGGATGATAGAAAGTGAGGACACTATCTGGATCGAGTATTACTATTCCTGGTCTTTTGCGTGCGCATGCACGGGCTTTGTCCTGCTCCTCCTCAGTGGAATTGGTCTGCTGCTCGTCTCCATGCCACAGATGCCTAGAAATCCCTGGGAGACCTGCATGGATGCCGAGCCTGATCAGATATAGAGCAGGAATTCCAGATGTCTGCAGCCATTTCAACAGTAATCTTCTTCTGCCTGGACACAGTGATGCTCTCAACTGCTCTGAGCAGAATGCAAATGTTTGGTCTGCTGTGGTTGCTGAATGCTTGGCCAgacattttggaataatttcAGATCTAGCAGGTGCGAAGAAAATGGCATCGATTTCGCCCTTATGCGAAACGTTAAAAGTATTCTGAGACTCTCCGAGTCTAGTTTCCACAAATGGGTTTCCAAGCTTGAAATGGATTGGTGTGCTCAATATTACAATAGAGAACAATGAGCTAATTTATGATCCTCTCAGGAACTGTGGTCATTTTTGGGTCTCAACATCCAGTTTATGTATCCAGTGTGTAGAGCGGAAAAAATCTTCACCATATTTCTGGGTGGTGATTTATCCTGTGTGTATAAAAAAGATCTAAACATCAAATGTATTGCCTATTTGAATAAGCTATACATACTATAGAAGCTTTTAAACTTAAAGCTTATTGAGCTTTACAAGTCTTATTAGACCCGGTTcctcaaaaatctttttttaataaagttgaTTTAGAACGTGGGGATTGCTGTCAGAGCCATAGCTTTGTGGGCGGTTCGAGAGCCTGCTTGTTTGTGGTCCTTTAGTATTCTTCTATTCTCTCATCTCTCCTCTCAATTCCTGTCATTGGCAttgctaaaaaaacacatggatGAGAATATCACCACATGCTGAGGCACATtcataaaattgtttaattgatTATAGTAGATGGTAGACAAACCTTGTAATTATATCAAAGATGTTTGGATCACGTTATGCTGTCCAgcagaataaatgtatttctggtATTACAACCCTATGTCatgtatttctaataaaaaaagtaagctAACTCCCA

Function

symbol description
cacng1a Predicted to enable calcium channel regulator activity. Predicted to be involved in regulation of calcium ion transmembrane transport via high voltage-gated calcium channel. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of L-type voltage-gated calcium channel complex. Human ortholog(s) of this gene implicated in malignant hyperthermia. Orthologous to human CACNG1 (calcium voltage-gated channel auxiliary subunit gamma 1).
cacng1 Predicted to enable calcium channel regulator activity. Predicted to be involved in regulation of calcium ion transmembrane transport via high voltage-gated calcium channel. Predicted to act upstream of or within calcium ion transmembrane transport and sarcoplasmic reticulum calcium ion transport. Predicted to be located in T-tubule. Predicted to be integral component of plasma membrane. Predicted to be part of L-type voltage-gated calcium channel complex. Implicated in malignant hyperthermia.

NR:

description
PREDICTED: voltage-dependent calcium channel gamma-1 subunit-like

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
K04866 CACNG1; voltage-dependent calcium channel gamma-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242974.1 True 2368 mRNA 0.40 4 8183015 8188383
XM_043242975.1 False 1775 mRNA 0.42 5 8183015 8188384

Neighbor

gene id symbol gene type direction distance location
inha inha,LOC107731770,LOC107688903,LOC107719299,LOC107694906,LOC107569459,LOC107586362 coding downstream 167256 8013125 ~ 8015759 (-)
LOC122347101 igfbp2,igfbp2a,LOC107731775,LOC107688817,LOC107719297,LOC107663074,LOC108438161 coding downstream 202926 7965748 ~ 7980089 (-)
LOC122346795 igfbp2,igfbp2a,LOC107688817,LOC107731775,LOC107719297,LOC107663074,LOC108438161 coding downstream 450691 7725403 ~ 7732324 (-)
LOC122347094 tns1a,LOC107688818,LOC107709585,LOC107719294,LOC107562221,LOC107663075 coding downstream 487896 7661464 ~ 7695119 (-)
tns1a tns1a,LOC107688818,LOC107709585,LOC107663075,LOC107719294,LOC107586330 coding downstream 523815 7608473 ~ 7659200 (-)
cacng4a LOC107688901,LOC107586376,LOC107716888 coding upstream 10727 8199111 ~ 8202841 (-)
psmd12 psmd12,LOC107688808,LOC107694910 coding upstream 14595 8202979 ~ 8206792 (-)
c6h22orf23 LOC107716895,LOC107586342,LOC107688809 coding upstream 39040 8227424 ~ 8232954 (-)
ppp1r12c ppp1r12c,LOC107688807,LOC107586341,LOC107710164,LOC107569470 coding upstream 45351 8233735 ~ 8246233 (-)
si:dkey-43k4.5 si:dkey-43k4.5,LOC107716889,LOC107586377,LOC107688900,LOC107569460,LOC107710151,LOC107694904 coding upstream 65653 8254037 ~ 8282084 (-)
G43660 NA non-coding downstream 133 8182679 ~ 8182882 (-)
G43513 LOC107688815 non-coding downstream 132337 8049397 ~ 8050678 (-)
G43528 NA non-coding downstream 325419 7856465 ~ 7857596 (-)
G43516 NA non-coding downstream 383318 7798124 ~ 7799697 (-)
G43478 NA non-coding downstream 684580 7461191 ~ 7498435 (-)
G43691 NA non-coding upstream 105670 8294054 ~ 8294286 (-)
G43697 NA non-coding upstream 126039 8314423 ~ 8314623 (-)
G43700 NA non-coding upstream 145978 8334362 ~ 8343514 (-)
G43709 NA non-coding upstream 260754 8449138 ~ 8450686 (-)
G43712 NA non-coding upstream 262403 8450787 ~ 8452319 (-)
G43514 spega,LOC107731772,LOC107688815,LOC107586363,LOC107719300 other downstream 135007 8047102 ~ 8048008 (-)
LOC122346476 cidec,LOC107731779,LOC107688813,LOC107694911,LOC107710160 other downstream 412564 7737090 ~ 7770451 (-)
G43463 nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882 other downstream 596648 7579895 ~ 7586367 (-)
nomo nomo,LOC107677623,LOC107562229,LOC107709581,LOC107733372,LOC107688882,LOC107586361 other downstream 853450 7316947 ~ 7329565 (-)
LOC122346787 unc80,LOC107733373,LOC107677624,LOC107688825 other downstream 868241 7274840 ~ 7314774 (-)
G43801 pick1,LOC107734822,LOC107734770,LOC107572282 other upstream 520322 8708706 ~ 8713858 (-)
G43890 NA other upstream 1072232 9260616 ~ 9261245 (-)
G43896 NA other upstream 1077618 9266002 ~ 9267324 (-)
G43899 NA other upstream 1080804 9269188 ~ 9270922 (-)
G43900 NA other upstream 1083034 9271418 ~ 9272305 (-)

Expression


Co-expression Network