mier1a (mier1,LOC107758364,LOC107724131,LOC107684256,LOC107551013,LOC107692413)


Basic Information

Item Value
gene id mier1a
gene name mier1,LOC107758364,LOC107724131,LOC107684256,LOC107551013,LOC107692413
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16563950 ~ 16570461 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242977.1
TAGCTCtattcattttaacacattatcGCTGGCTTCACAGAACCTACAACAACAATGGCGGAGCCCTCCTTAAGTGGTTCATGCTCGGAAGGAGCACGTCCGGTGGTCCCAGATGAGGACAGAGACTTTGATCCTTCAGCAGACATGCTCGTTCATGACTTTGATGACGAGCGGACATTGGAAGAAGAGGAAAAGCTGGAGGGAGAGACCAACTTCAGTGCCGAAATTGATGACCTCACTCGAGAGGGTGAGATGCCCATTGAGGAACTTCTGAAGTTGTATGGCTACAGCACTGGTGGGTCTCCAGAGGAAGAGGATGGAGATGTTCAAGAGGAGGATTCTTCAGAGAATAACTGCAGCAGCCATAGTAAACCCAAAGAGGACGAGAAGCAGGAGGATGATCAGGAGAATCAAGAGGATGAGGATGTGCAGTCGTCTGGTGAGGAGCCTCCGTCCTGCAGTGTTTCTCACAGCACCGCTCAGCTCCTATACCCTCGCCCATCCAATTACTTGGAAGGAGATGAGGAAGAATCTGAAGATGATGATTATATTCCTTCTGAGGATTGGAAGAAGGAAATCATGGTCGGTTCAATGTATCAAGCGGAGACTCCTGCTGGCCTTTGCAAATATAAGGATAATGAAAAAGTGTATGAGAATGAAGATCAGCTTTTGTGGAATCCAGAGTTAATTCCAGAAGATAAGGTTGTAGAGTTTTTAACCGAGGCGTCTAAATGCAGTGGAGACGAGACTGGTGTCCATGCAATTCCTGAAGGATCTCACATCAAAGACAATGAACAGGCTCTTTATGAGttgtttaaatgcaactttaatTCGGAAGAAGCTTTAAGACGACTGAAATTTAATGTGAAGCCTGCCAAAGAGGAAATGTCAGTTTGGACGGAAGAGGAGTGTCGAAGTTTTGAGCAAGGACTCAACTCTTACGGAAAAAATTTCAGCTCAATACAAGCAAATAAGGTGAGAACTAGATCTGTAGGGGAATGTGTGGCCTTTTATTACATGTGGAAGAAATCTGAGCGTTATGATTTCTTTGCACAGCAAACCAAGcttggaaaaagaaaatacagtctTCGTCCTGGAGTTTTAGATTATATGGAGTGTATTTTGGAGAGCTCAGAGTCCAGTGGATCTTCGTCTTCACTTCCCACCTCTTCAAACAACAGCAAACACCCATCTGAGCCAGAGAGTGACACGAATGCCCAGAACGGCGTAGGAAGCCATTCCTCCATTCCCCTTCTCTGTGTCACAGACGAGACATCTCAGACAAACGGCTCCGCCACATGTCCAGAGATTTCCACGGCAAACACACCGCCCCGCTCAAACCCTGCCGCCAGCAGCCCGAGCGCACAAGTCATGGAGATCACAGTCAaacaggaggaggaagaagagcaCTGTGAAAGACCTCTCAAAAGGCTTCGGACTGACACAGAGCCCAGCAGTGAGGGGTCTGTCCCccacaacaaaacagaaaccGTCTGACTCGCCAGCAGAAAGCCACAACTCCTGACCTCAGACGAGGGGTTGACACAGGCCCTGTTTAAGCATGAAGGTAgctgagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaacttcAGGGATGCAAATGAAGCACATTTCTGTCCTCTCACATTACTGCCGCTGAGCTCAGTTCATATCTCAAACACTCATCATGATAGACTGTCGTATCAGACAGCCAACTCTgtagcattatttattaatataggtTAAGCTGATCAAATTGTTTGCTCTATGTTTGAAAGAAACATCTGAAAGACTGTATTTTATTGTGAAACCTCCGTCGTTTGGTGTGCAGGACGTTGCTCTAGCTGTAAATGCACACTGTGGAAACCCCTCTTGGTTTTATATGAAgtgtaatactgtaaatattcgAAATCtgaacttattaaaaaaaaatacactttttgtaTTTGGAACATTTTGACTATTTCAGGCGgttgtaaaaatgtctttttaacgTTGCAACATTCCATCcttttcatttctgaatttCCTATTTGACCAAAGTGAATGGTTGTTATCGGTCTTTTaacacaaagcatttttaatagatatttcctctttatatgaaatattgtcttatttttgtatttgatagctatttattttttttaaatcagatattgGTGATGCATGAGGCCAGTATACAGAGTATATTTGTATAGGCTGGAACGAGTAGTCTTGAATTAAAAAGGCAGAGCAGAAATGAATGgtgctatttattcattttctcacTGTGAGAAAGTCAACCCatccttaatattttttctttttaagttttctAGGACCTCTTATTCCTTTCAGAAATGGTAGAGGAAAGTGGAATCTACGGTTTCTGTAAACTGGTTGTCATTCATGTCTGCATAGCTCAGGAAAATAAGTACGGAAACATAGGGTGTGTCAAATAGTTGTCAGTTTCGATTAGTGAACTACTCATTCATTAAACTCAGACTTATTACCCAAA
>XM_043242978.1
cattatcGCTGGCTTCACAGAACCTACAACAACAATGGCGGAGCCCTCCTTAAGTGGTTCATGCTCGGAAGGAGCACGTCCGGTGGTCCCAGATGAGGACAGAGACTTTGATCCTTCAGCAGACATGCTCGTTCATGACTTTGATGACGAGCGGACATTGGAAGAAGAGGAAAAGCTGGAGGGAGAGACCAACTTCAGTGCCGAAATTGATGACCTCACTCGAGAGGGTGAGATGCCCATTGAGGAACTTCTGAAGTTGTATGGCTACAGCACTGGTGGGTCTCCAGAGGAAGAGGATGGAGATGTTCAAGAGGAGGATTCTTCAGAGAATAACTGCAGCAGCCATAGTAAACCCAAAGAGGACGAGAAGCAGGAGGATGATCAGGAGAATCAAGAGGATGAGGATGTGCAGTCGTCTGGTGAGGAGCCTCCGTCCTGCAGTGTTTCTCACAGCACCGCTCAGCTCCTATACCCTCGCCCATCCAATTACTTGGAAGGAGATGAGGAAGAATCTGAAGATGATGATTATATTCCTTCTGAGGATTGGAAGAAGGAAATCATGGTCGGTTCAATGTATCAAGCGGAGACTCCTGCTGGCCTTTGCAAATATAAGGATAATGAAAAAGTGTATGAGAATGAAGATCAGCTTTTGTGGAATCCAGAGTTAATTCCAGAAGATAAGGTTGTAGAGTTTTTAACCGAGGCGTCTAAATGCAGTGGAGACGAGACTGGTGTCCATGCAATTCCTGAAGGATCTCACATCAAAGACAATGAACAGGCTCTTTATGAGttgtttaaatgcaactttaatTCGGAAGAAGCTTTAAGACGACTGAAATTTAATGTGAAGCCTGCCAAAGAGGAAATGTCAGTTTGGACGGAAGAGGAGTGTCGAAGTTTTGAGCAAGGACTCAACTCTTACGGAAAAAATTTCAGCTCAATACAAGCAAATAAGCAAACCAAGcttggaaaaagaaaatacagtctTCGTCCTGGAGTTTTAGATTATATGGAGTGTATTTTGGAGAGCTCAGAGTCCAGTGGATCTTCGTCTTCACTTCCCACCTCTTCAAACAACAGCAAACACCCATCTGAGCCAGAGAGTGACACGAATGCCCAGAACGGCGTAGGAAGCCATTCCTCCATTCCCCTTCTCTGTGTCACAGACGAGACATCTCAGACAAACGGCTCCGCCACATGTCCAGAGATTTCCACGGCAAACACACCGCCCCGCTCAAACCCTGCCGCCAGCAGCCCGAGCGCACAAGTCATGGAGATCACAGTCAaacaggaggaggaagaagagcaCTGTGAAAGACCTCTCAAAAGGCTTCGGACTGACACAGAGCCCAGCAGTGAGGGGTCTGTCCCccacaacaaaacagaaaccGTCTGACTCGCCAGCAGAAAGCCACAACTCCTGACCTCAGACGAGGGGTTGACACAGGCCCTGTTTAAGCATGAAGGTAgctgagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaacttcAGGGATGCAAATGAAGCACATTTCTGTCCTCTCACATTACTGCCGCTGAGCTCAGTTCATATCTCAAACACTCATCATGATAGACTGTCGTATCAGACAGCCAACTCTgtagcattatttattaatataggtTAAGCTGATCAAATTGTTTGCTCTATGTTTGAAAGAAACATCTGAAAGACTGTATTTTATTGTGAAACCTCCGTCGTTTGGTGTGCAGGACGTTGCTCTAGCTGTAAATGCACACTGTGGAAACCCCTCTTGGTTTTATATGAAgtgtaatactgtaaatattcgAAATCtgaacttattaaaaaaaaatacactttttgtaTTTGGAACATTTTGACTATTTCAGGCGgttgtaaaaatgtctttttaacgTTGCAACATTCCATCcttttcatttctgaatttCCTATTTGACCAAAGTGAATGGTTGTTATCGGTCTTTTaacacaaagcatttttaatagatatttcctctttatatgaaatattgtcttatttttgtatttgatagctatttattttttttaaatcagatattgGTGATGCATGAGGCCAGTATACAGAGTATATTTGTATAGGCTGGAACGAGTAGTCTTGAATTAAAAAGGCAGAGCAGAAATGAATGgtgctatttattcattttctcacTGTGAGAAAGTCAACCCatccttaatattttttctttttaagttttctAGGACCTCTTATTCCTTTCAGAAATGGTAGAGGAAAGTGGAATCTACGGTTTCTGTAAACTGGTTGTCATTCATGTCTGCATAGCTCAGGAAAATAAGTACGGAAACATAGGGTGTGTCAAATAGTTGTCAGTTTCGATTAGTGAACTACTCATTCATTAAACTCAGACTTATTACCCAAA

Function

symbol description
mier1 Enables histone deacetylase binding activity. Contributes to histone deacetylase activity. Involved in histone deacetylation and positive regulation of chromatin silencing. Located in nucleoplasm. Part of transcription repressor complex.

NR:

description
PREDICTED: mesoderm induction early response protein 1-like isoform X1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005488 binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242977.1 True 2514 mRNA 0.43 13 16563950 16570461
XM_043242978.1 False 2413 mRNA 0.43 13 16563950 16570441

Neighbor

gene id symbol gene type direction distance location
dmrt2b dmrt2b,LOC107684342,LOC107551024,LOC107692445 coding downstream 175536 16384336 ~ 16388414 (-)
LOC122347428 tmem125,LOC107725195,LOC107684333,LOC107551025,LOC107594640 coding downstream 213681 16340305 ~ 16350269 (-)
tie1 tie1,LOC107731644,LOC107684058,LOC107725190 coding downstream 252297 16299579 ~ 16311653 (-)
mpl mpl,LOC107725197,LOC107594610,LOC107551019,LOC107725192 coding downstream 265025 16292195 ~ 16298925 (-)
prpf38a prpf38a,LOC107731643,LOC107725199,LOC107692408,LOC107684051 coding downstream 279804 16281389 ~ 16284146 (-)
slc35d1a slc35d1a,LOC107724140,LOC107551012,LOC107684099,LOC107758361,LOC107594604,LOC107692433,LOC108441641 coding upstream 683 16571144 ~ 16578063 (-)
serbp1a LOC107594603,LOC107692416,LOC107758366,LOC107724138 coding upstream 32834 16603295 ~ 16609663 (-)
hsd17b7 hsd17b7,LOC107551038,LOC107758362,LOC107692446,LOC107724130 coding upstream 39819 16610280 ~ 16617199 (-)
ddr2a ddr2,ddr2a,LOC107724144,LOC107551036,LOC107594601 coding upstream 48111 16618572 ~ 16647615 (-)
uap1 uap1,LOC107724142,LOC107551035,LOC107692418 coding upstream 79004 16649465 ~ 16659733 (-)
G45770 NA non-coding downstream 241145 16320413 ~ 16322805 (-)
G45753 NA non-coding downstream 292842 16270902 ~ 16271108 (-)
G45752 NA non-coding downstream 294558 16268915 ~ 16269392 (-)
G45751 NA non-coding downstream 296408 16267183 ~ 16267542 (-)
G45709 NA non-coding downstream 445364 15902216 ~ 16118586 (-)
G45897 NA non-coding upstream 616995 17187456 ~ 17187794 (-)
G45930 LOC107582740,LOC107685313,LOC107722678 non-coding upstream 944177 17514638 ~ 17518605 (-)
G45993 NA non-coding upstream 1237160 17807621 ~ 17808115 (-)
G46000 NA non-coding upstream 1252075 17822536 ~ 17822735 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding upstream 1469903 18040364 ~ 18044630 (-)
fam183a fam183a,LOC107551015 other downstream 199930 16361167 ~ 16364020 (-)
G45731 LOC107692397,LOC107556985,LOC107717145,LOC106584012 other downstream 503484 16059893 ~ 16060466 (-)
G45730 pik3r3,LOC107692397,LOC107717145,LOC107675943 other downstream 504183 16058968 ~ 16059767 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other downstream 798843 15756309 ~ 15765107 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other downstream 958480 15603910 ~ 15605470 (-)
rgs8 rgs8,LOC107711118,LOC107551030,LOC107732448,LOC107564081,LOC108441527 other upstream 246179 16816640 ~ 16830261 (-)
G45895 NA other upstream 616228 17186689 ~ 17187318 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other upstream 665329 17235790 ~ 17246386 (-)
G45910 NA other upstream 737354 17307815 ~ 17308478 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other upstream 811866 17382327 ~ 17414139 (-)

Expression


Co-expression Network