LOC122346379


Basic Information

Item Value
gene id LOC122346379
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16838389 ~ 16961691 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251126.1
CAAAGTCAGGATCGTTCCTGTATCTCCCTCCAGTGTGAAATATCAATCTGCCGACCACAATGCTAGAAGTGAAAAAGCCTCCCATTTGCAAAGAAAGTCAAGACATATAGTATTTCCTCCATGCTCTCTATGCAGCTAATGGAATATAGCTATTGGTCCAGAGCAAGGCATATCCTTCATTGTCTCATCCTACCCCACTGGATCAATACTAATTGCATGCGgTTCCACACtagaaagaaacagaacaagACAGAAGTTTGGGATTGATGTGATGTAGGATGCTACATTGCAAGAAAAGCAGCTATATGTAGGcagtaggcagctcactaggtgcTGGAACAGAGCCAGTGTGTTTCAAACCCTGCGCAGACTCTGCACACTTCACGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251126.1 True 387 lncRNA 0.45 3 16838389 16961691

Neighbor

gene id symbol gene type direction distance location
rgs4 rgs4,LOC107684221,LOC107711032,LOC107732436,LOC107551023,LOC107564089,LOC107685323 coding upstream 56256 16779272 ~ 16782133 (+)
uhmk1 uhmk1,LOC107692420,LOC107684193 coding upstream 170316 16660355 ~ 16668073 (+)
il12rb2 LOC107684120,LOC107724137,LOC107551010 coding upstream 234229 16593238 ~ 16604160 (+)
il23r LOC107724136,LOC107684101,LOC107692414 coding upstream 246645 16580538 ~ 16591744 (+)
lrp8 LOC107724141,LOC107684070,LOC107758363,LOC107692412 coding upstream 278274 16425419 ~ 16560115 (+)
rhcgl1 rhcgl1,LOC107722672,LOC107582811,LOC107685316,LOC107711010,LOC107667994,LOC107585195 coding downstream 523713 17485404 ~ 17489630 (+)
lrrc15 lrrc15,LOC107711115,LOC107585214 coding downstream 546665 17508356 ~ 17515931 (+)
LOC122346707 LOC107582740,LOC107685313,LOC107722678 coding downstream 552729 17514420 ~ 17517229 (+)
lnp1 LOC107585171,LOC107673618,LOC107711110,LOC107582738,LOC107685315,LOC107722679 coding downstream 817471 17779162 ~ 17786165 (+)
tmem45a tmem45a,LOC107673617,LOC107585212,LOC107582844,LOC107711111,LOC107685333,LOC107722675 coding downstream 824808 17786499 ~ 17791846 (+)
G45826 NA non-coding upstream 72102 16766065 ~ 16766287 (+)
G45817 nos1ap,LOC107594625 non-coding upstream 147328 16682741 ~ 16691061 (+)
LOC122346974 c6h1orf226,LOC107551033,LOC107684213,LOC107711121,LOC107594625,LOC107732445,LOC107692421 non-coding upstream 159296 16670364 ~ 16679093 (+)
G45815 LOC107551035,LOC107724142,LOC107692418 non-coding upstream 178702 16658679 ~ 16659687 (+)
G45785 uap1,LOC107724142,LOC107551035 non-coding upstream 181769 16655698 ~ 16656620 (+)
G45896 NA non-coding downstream 225727 17187418 ~ 17187804 (+)
G45903 NA non-coding downstream 275899 17237590 ~ 17239978 (+)
G45922 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 non-coding downstream 591826 17553517 ~ 17669007 (+)
G45962 LOC107585173,LOC107582739,LOC107711112 non-coding downstream 810463 17772154 ~ 17772733 (+)
G46020 NA non-coding downstream 983035 17944726 ~ 17995069 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other upstream 1271721 15564981 ~ 15566668 (+)
G45419 sgip1,sgip1a,LOC107739126 other upstream 1379003 15358861 ~ 15459386 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other upstream 1594109 15236165 ~ 15244280 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 2858103 13972173 ~ 13980286 (+)
G44887 NA other upstream 3428477 13394229 ~ 13409912 (+)
G45894 NA other downstream 225017 17186708 ~ 17187308 (+)
G46022 NA other downstream 1033500 17995191 ~ 17996717 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other downstream 1194964 18156655 ~ 18166242 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other downstream 1615487 18577178 ~ 18616958 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other downstream 2300893 19262584 ~ 19347629 (+)

Expression


Co-expression Network