LOC122346442


Basic Information

Item Value
gene id LOC122346442
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14651716 ~ 14656031 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251129.1
ACGAAACCCCATAATGGCAGATGGGCTCCAGGTGTGCAGTTGATGACGTGCCAGGGGTGGATCGAGACCCAGTGAACCTCAGGATGGGCTTCCCAAGTCTGTTAGCACATCCTCGGGTTATCATCTGCTACACAGCATACAGCTGGAATGCCAAGCTTCGACACAAAGCGACACACTAGAGAGATAGACTGATGACTTGGATTTAATGGAGGATTGCAGAAACCAGGAGCTGGAAACGGAGAGGGATAAAGTTCACACCACAGGAGCTGATCGTAACGGGAAAACACAAGGGACAACTGGAACTGGAGAAGAACATAAGAGAGCAGACGACAGCCAGTTGACCCCTGGACAAAGAAGTGCACTGTCCGGAGCATGGGGCTCTGATCTTAAGCAGTACAGATGAACAGAAAGACTTCCTCAAGTGAACAGTCTTCTTTATTAAGACCTCAGGACAACCGAAACAGGTATTACAGGAGAGGCTTTCCTTCCACATCCGTGCTTTCCAAAGCTTTAGTGAACACAATACGGCTTGGATTACTGCAATTTGGCAGCACAATGGAGAAAGAAG
>XR_006251130.1
ACGAAACCCCATAATGGCAGATGGGCTCCAGGTGTGCAGTTGATGACGTGCCAGGGGTGGATCGAGACCCAGTGAACCTCAGGATGGGCTTCCCAAGTCTGTTAGCACATCCTCGGGTTATCATCTGCTACACAGCATACAGCTGGAATGCCAAGCTTCGACACAAAGCGACACACTAGGATTGCAGAAACCAGGAGCTGGAAACGGAGAGGGATAAAGTTCACACCACAGGAGCTGATCGTAACGGGAAAACACAAGGGACAACTGGAACTGGAGAAGAACATAAGAGAGCAGACGACAGCCAGTTGACCCCTGGACAAAGAAGTGCACTGTCCGGAGCATGGGGCTCTGATCTTAAGCAGTACAGATGAACAGAAAGACTTCCTCAAGTGAACAGTCTTCTTTATTAAGACCTCAGGACAACCGAAACAGGTATTACAGGAGAGGCTTTCCTTCCACATCCGTGCTTTCCAAAGCTTTAGTGAACACAATACGGCTTGGATTACTGCAATTTGGCAGCACAATGGAGAAAGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251129.1 True 568 lncRNA 0.49 6 14651716 14656031
XR_006251130.1 False 536 lncRNA 0.49 5 14651716 14656031

Neighbor

gene id symbol gene type direction distance location
cachd1 cachd1,LOC107556548,LOC107692379,LOC107739146 coding downstream 8728 14587270 ~ 14642988 (-)
raver2 raver2,LOC107709187,LOC107659056,LOC107556545,LOC107692377,LOC107739056,LOC107591176 coding downstream 68715 14523682 ~ 14583001 (-)
ak4 ak4,LOC107590615,LOC107659053,LOC107692375,LOC107591174 coding downstream 159250 14485606 ~ 14492466 (-)
dnajc6 dnajc6,LOC107659052,LOC107692374,LOC107591170,LOC107590617 coding downstream 166236 14458989 ~ 14485480 (-)
lepr LOC107709190,LOC107738956,LOC107692373,LOC107591169,LOC107659051 coding downstream 201444 14414809 ~ 14450272 (-)
ror1 ror1,LOC107731648,LOC107556549,LOC107591177,LOC107739155 coding upstream 1853 14657884 ~ 14757952 (-)
pgm1 pgm1,LOC107731639,LOC107704513,LOC107591179,LOC107739071,LOC107692428 coding upstream 106680 14762711 ~ 14769897 (-)
efcab7 efcab7,LOC107704512,LOC107731637,LOC107739082,LOC107692381,LOC107591198 coding upstream 114951 14770982 ~ 14780729 (-)
alg6 alg6,LOC107704515,LOC107692382,LOC107591199 coding upstream 133645 14789676 ~ 14801854 (-)
foxd3 foxd3,LOC107717135,LOC107591180,LOC107731647,LOC107692383,LOC107704516 coding upstream 149273 14805304 ~ 14812624 (-)
G45277 NA non-coding downstream 157694 14493121 ~ 14494022 (-)
LOC122346673 NA non-coding downstream 372687 14263789 ~ 14279029 (-)
G45271 sgip1,sgip1a,LOC107739126 non-coding downstream 435440 14214638 ~ 14216276 (-)
G45270 LOC107692440 non-coding downstream 438730 14211366 ~ 14212986 (-)
G45225 lrrc40,LOC107590628,LOC107709203 non-coding downstream 669831 13981229 ~ 13981885 (-)
G45355 NA non-coding upstream 249471 14905502 ~ 14905708 (-)
G45532 NA non-coding upstream 446659 15102690 ~ 15154616 (-)
G45543 NA non-coding upstream 529121 15185152 ~ 15239640 (-)
G45544 LOC107731621,LOC107675939,LOC107556983 non-coding upstream 577236 15233267 ~ 15745536 (-)
G45560 NA non-coding upstream 663354 15319385 ~ 15320034 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 458550 14160475 ~ 14193166 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other downstream 865813 13718202 ~ 13785903 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 970422 13655260 ~ 13681294 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other downstream 1753998 12525756 ~ 12897718 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 3582250 11055035 ~ 11069466 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 671552 15327583 ~ 15330851 (-)
insl5a LOC107692440 other upstream 833087 15489118 ~ 15490685 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other upstream 879355 15535386 ~ 15685485 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other upstream 947879 15603910 ~ 15605470 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other upstream 1100278 15756309 ~ 15765107 (-)

Expression


Co-expression Network