G26752


Basic Information

Item Value
gene id G26752
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3119950 ~ 3122260 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU30173
CTTTGATCCTTTGTTGCAACACAGAATGTTGATCATTCCCTTTTAGTTGGTGATTAGCCAGCTGTTCACTCACATGATTGGCTCCATGCAGGACAATCTCTCTTTTGTGCTTTCCTATGGCAAGGGCTGTAGAGCTGCACTTGTGGCAGGTGAAATGATTCTCTAGCGCGTCTGATCCCAGATAAGGAGAGTCTTCTCTCTCCCAGGGCTGATGGGATTTGTAGTTGCTGTTGTAGAGCGCATGGCTCATAGATAGAGTGTCCTTGCCTTCGCAGAAATTCCACTGGGTTGATTCCGGACTGGATGTGTTCCTTTCTCCAGCTCTACCCTCCTCCTGAACAAGTTTAAATTTCTTACTGAGTTTGTGGTATGCAATGGCAATCAGTCCCAGGGTGATCCCAACACCACCTACAATTCAAAACAGAACTGATGAAGTGATTCCATGAATTAAAGAAAAGACAAAATCTAGTTGTAAACACAAGTTATTGTATACTCTTTGTATTCATGTTAATTTCATTGTTAATATTTTTATTATTTTTTAGTTTAATCTAAAAAAATGCCGTGGTATCAACAAAATCAACCATCAAGTAAAAAAATAATATTTAATAATTGCATAATTCATAAATCCTAAATTATGGTAACACTTTACAATAAGGTCTAATTTGTTAACATTAGTATACAAATTAATTAACAAATAAATTAATACATTTATTTATTAAATTATTTACTATAAAACATATTTATTAATTAATAAATAAACAAATAAATTAATTAGTTTAAGGCATTATTTAACATGAATGAGCAATATTTTCCTGCAGCATTTTTTAACCTTTGTTAATGTTAGTTGATAAAAATGTTTGTGTTGTTCATGTTAGTTCACAGTGCATTAATAATGTTAACAGATACAACTTTTGATCTTAAAAAATGAATTAGTAAATATTGAGATTAACATGAACTAAGAATAAATGCTGTAGAAATATTGTTCATTGCTAGTTTGTGTTAACTAATGTTCACTAAATGTTAACAAATGAAACCTTATTGTAAATTGTATCCTAAATTATTAATTCATAAATATAAGTATTTGAGAAGTTGCACCACATGACATTTTACAACCTGAACTAAACTTCTCGTGTATTAAATTATCTAACACACAATCATGAGAGTCTGCAAGGGTCCTATTTCTGCATGTTGGTCGCATGCACTGATCTATAACAGATCAGTGGTCGCACCACATGACTCTGCTTTTGTGGATAAACTTTTTTTTTTTATAATAATAGGCAGTTTGGTTAAATATTTTATAAGAAACAATAATAAGTGGTTATGCCAAAATGTTTTCTTTTCCAAAATGTAATTCTATTAATAACCCTGTCTTGTTTTATTCGCATCAAATTAATGGATTAACAGAGCATCACGTCATTGACCCTAACGAAAATACAGAATGTTTCGCTATCAAGCATTTGTATTAGATACTCACCGAAAAATGAAAACACAATGGCAATAGCAACATTTCTAATATATTGCTGAGAAGTGTTATTACTTTTAGCCACAACCTCCACTGTGATATTCCTGTTTGGTGGGACACAGTTAGCATCAGTCAGCTCCAGCACAGTCTGCACAGCTGGATTATCTGTATTCACACACACCATCCTCTGCCCATTGTACAACACTTTATCAGGAGCCTGAATGTAATTGTTGAGGAATGAGGCCAGCTCTCTCAACTCACACGTACAGCTCCAGTGGTTCAAATCAAGGTTCAGCACAGAGAGCCATGACAGGTATGAGAAGGCATCCGGAGCGTTGCGTAGATGATTTCGGGACAGATCAAGGCTGCGGAGACTAGGCATCCCTCGGAAGCTATCACTGCCTATGTACACAATGAGGTTGTCGGACAAGTCCAGCGTTTCCAGGTTCCTCAGGTCCGCGTGGGCAAAGGTGGTGGAGTTCAAGACTGTAAAGTGGTTCCCCTCTAGCTGAAGTGTTTTTAAAGCTCTAGAGTTTTGAAACCAGGAGCCATCAATGTCTTTCAGATCGTTGTTACCCAGCTGGAGAGTCTCCAGTCTGTGAAGCCAGGAGAACGTGGAGTTGTCCAGGGTTTGACTGGAGATGCGGTTGTGGTCCAGCGACAGTGTTGTAAGGAAAGTGAGATTCTGAAATGCATCCTGCATGATGCTGGAAATGGCATTGTTGCTGAGTGCCAGAACACTCATGTTGGTTAAATCAGAAAGAACCATGTTGTCCACAGAATCAATGAGTCCATCAGTGAGCATCAAAGCTTTTGTAGAGCCTGGTGCATCTGAACATTATGAAAAAA
>TU30174
TTATTTAACATGAATGAGCAATATTTTCCTGCAGCATTTTTTAACCTTTGTTAATGTTAGTTGATAAAAATGTTTGTGTTGTTCATGTTAGTTCACAGTGCATTAATAATGTTAACAGATACAACTTTTGATCTTAAAAAATGAATTAGTAAATATTGAGATTAACATGAACTAAGAATAAATGCTGTAGAAATATTGTTCATTGCTAGTTTGTGTTAACTAATGTTCACTAAATGTTAACAAATGAAACCTTATTGTAAATTGTATCCTAAATTATTAATTCATAAATATAAGTATTTGAGAAGTTGCACCACATGACATTTTACAACCTGAACTAAACTTCTCGTGTATTAAATTATCTAACACACAATCATGAGAGTCTGCAAGGGTCCTATTTCTGCATGTTGGTCGCATGCACTGATCTATAACAGATCAGTGGTCGCACCACATGACTCTGCTTTTGTGGATAAACTTTTTTTTTTTATAATAATAGGCAGTTTGGTTAAATATTTTATAAGAAACAATAATAAGTGGTTATGCCAAAATGTTTTCTTTTCCAAAATGTAATTCTATTAATAACCCTGTCTTGTTTTATTCGCATCAAATTAATGGATTAACAGAGCATCACGTCATTGACCCTAACGAAAATACAGAATGTTTCGCTATCAAGCATTTGTATTAGATACTCACCGAAAAATGAAAACACAATGGCAATAGCAACATTTCTAATATATTGCTGAGAAGTGTTATTACTTTTAGCCACAACCTCCACTGTGATATTCCTGTTTGGTGGGACACAGTTAGCATCAGTCAGCTCCAGCACAGTCTGCACAGCTGGATTATCTGTATTCACACACACCATCCTCTGCCCATTGTACAACACTTTATCAGGAGCCTGAATGTAATTGTTGAGGAATGAGGCCAGCTCTCTCAACTCACACGTACAGCTCCAGTGGTTCAAATCAAGGTTCAGCACAGAGAGCCATGACAGGTATGAGAAGGCATCCGGAGCGTTGCGTAGATGATTTCGGGACAGATCAAGGCTGCGGAGACTAGGCATCCCTCGGAAGCTATCACTGCCTATGTACACAATGAGGTTGTCGGACAAGTCCAGCGTTTCCAGGTTCCTCAGGTCCGCGTGGGCAAAGGTGGTGGAGTTCAAGACTGTAAAGTGGTTCCCCTCTAGCTGAAGTGTTTTTAAAGCTCTAGAGTTTTGAAACCAGGAGCCATCAATGTCTTTCAGATCGTTGTTACCCAGCTGGAGAGTCTCCAGTCTGTGAAGCCAGGAGAACGTGGAGTTGTCCAGGGTTTGACTGGAGATGCGGTTGTGGTCCAGCGACAGTGTTGTAAGGAAAGTGAGATTCTGAAATGCATCCTGCATGATGCTGGAAATGGCATTGTTGCTGAGTGCCAGAACACTCATGTTGGTTAAATCAGAAAGAACCATGTTGTCCACAGAATCAATGAGTCCATCAGTGAGCATCAAAGCTTTTGTAGAGCCTGGTGCATCTGAACATTATGAAAAAA
>TU30175
CTTTGATCCTTTGTTGCAACACAGAATGTTGATCATTCCCTTTTAGTTGGTGATTAGCCAGCTGTTCACTCACATGATTGGCTCCATGCAGGACAATCTCTCTTTTGTGCTTTCCTATGGCAAGGGCTGTAGAGCTGCACTTGTGGCAGGTGAAATGATTCTCTAGCGCGTCTGATCCCAGATAAGGAGAGTCTTCTCTCTCCCAGGGCTGATGGGATTTGTAGTTGCTGTTGTAGAGCGCATGGCTCATAGATAGAGTGTCCTTGCCTTCGCAGAAATTCCACTGGGTTGATTCCGGACTGGATGTGTTCCTTTCTCCAGCTCTACCCTCCTCCTGAACAAGTTTAAATTTCTTACTGAGTTTGTGGTATGCAATGGCAATCAGTCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU30173 False 2311 lncRNA 0.37 1 3119950 3122260
TU30174 False 1527 lncRNA 0.39 1 3119950 3121476
TU30175 True 389 lncRNA 0.47 1 3121872 3122260

Neighbor

gene id symbol gene type direction distance location
CI01000004_03106070_03109051 NA coding downstream 10899 3106042 ~ 3109051 (-)
CI01000004_03070803_03073454 LHX8, LHX8A coding downstream 46469 3070616 ~ 3073481 (-)
CI01000004_02953160_02955378 NA coding downstream 164460 2953146 ~ 2955490 (-)
CI01000004_02834634_02863535 GREB1L coding downstream 256352 2832744 ~ 2863598 (-)
CI01000004_02812936_02825192 TROVE2 coding downstream 294758 2812853 ~ 2825192 (-)
CI01000004_03133701_03141953 ACOT11, ACOT11A coding upstream 11414 3133674 ~ 3141979 (-)
CI01000004_03187077_03196194 MRPL37 coding upstream 64817 3187077 ~ 3196198 (-)
CI01000004_03204599_03205569 TCEANC2 coding upstream 82312 3204572 ~ 3206068 (-)
CI01000004_03214098_03222707 GLMNA, GLMN coding upstream 91838 3214098 ~ 3222707 (-)
CI01000004_03238528_03240932 GFI1AA, GFI1 coding upstream 116098 3238358 ~ 3241491 (-)
G26751 NA non-coding downstream 2669 3116786 ~ 3117281 (-)
G26714 NA non-coding downstream 51417 3020161 ~ 3068533 (-)
G26691 NA non-coding downstream 152965 2965700 ~ 2966985 (-)
G26690 NA non-coding downstream 154360 2965251 ~ 2965590 (-)
G26689 NA non-coding downstream 154771 2964897 ~ 2965179 (-)
G26744 NA non-coding upstream 10296 3132556 ~ 3132765 (-)
G26754 NA non-coding upstream 50150 3172410 ~ 3179358 (-)
G26820 NA non-coding upstream 92630 3214890 ~ 3215202 (-)
G26788 NA non-coding upstream 145423 3267683 ~ 3275721 (-)
G26810 NA non-coding upstream 178539 3300799 ~ 3306425 (-)
CI01000004_01773383_01774888 INSL5B other downstream 1345009 1772928 ~ 1774942 (-)
G27746 NA other upstream 2055967 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 2498123 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 3412567 6538904 ~ 6541252 (-)
G29388 NA other upstream 3509033 6631293 ~ 6631907 (-)

Expression


Co-expression Network