LOC122346731 (nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305)


Basic Information

Item Value
gene id LOC122346731
gene name nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18040364 ~ 18044630 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251163.1
CCTGCAAGCagctaataaacaaacaatcaacTTTCTGTTCTCTAGAGATCGTCTGGCTGTGGTGCAGTTAcatgtctcaaagattaaggcGGACAACTTGTGAAGGAGGCTGCAGAACAAGGAGCAAAAGTTGTAGTCTTACCTgaGTGCTTCAACTCGCCTTATGGAACTGGGTTCTTTGCCGAGTATGCTGAGAAGATCCCAGGAGAATCCACACAGGTGTTGTCGGAGGCAGCCAAGGACTGTGGGGTCTATTTAGTGGGCGGTTCCATTCCTGAGAAGGATGGAGAAAAGCTCTTTAACACCTGCTTAGTTTTCGGACCTGATGGAAAGCTGCTTGTCAAACACAGGAAAATTCATCTTTTTGATATCGATGTACCAGGGAAAACATCTAGAAGTCTAGAACACTAAGTCCAGGAAACAGTTTATTCATGTCTGAAACACGTGAGTGTGTGTTACAGAAATCTTTTCcatgttagaaaaaaaatacagcatattgttgctttttgtcaatacttgatttatttatttttttatcagaatcAATGTCAACAGGTATTAAAAGGCAAGTGTATTTATGTAAGAAAATGCAgtgttaaaattgtattttttgccaCATTCAGTGCTGTGGAATTgagttttaaactaaaaaatgtatgtttgttcTTACAgttacaaatattatttgttttttaaattagttttatttttatgtcacaCCAAAGGACACATCAACTACCCATTAATATGTTCTTTAGAagaacagccaatatgctagtaatatgcatgataaCAAGCAACTATAGTTAATGAAAATTGGACACAAATCTAAATCTAtaccaaaaaaagtaatatttttaaatggacaAAGATAAATATTATCTGAACCTgaagtttttgtaataaatgggaatttgtacattttaaagaagGTTCGATAACGTTTAGTGACCAGTTTgccatgaaaaaaaacccagaaactTATCTAGGAGTCAATATTGTAATATAGCAGAATTAACTATTAGAAGATAAACTATTAATATTGCAAACCAAATTAGATTATATGTACCGTAAAACAATTCAAGGTTCATTTGTGAGATCACAGGCTTTTCCGCTATCATTGTGCTGGTAGATATTAAATTCTGGACTAACCAGTGGGGgtgattaaatattatttagtcaTGGGACCAACAAGTCTGCTGGTGttgcaatttgttttaatagttttctattaaaacaaattgttaaaacaaaacaaaatgttaaatcttTCTTCTTATAAGAGCACCATCTGTGCTCACatcaataaacattcatttatatgcTTC
>XR_006251164.1
CCTGCAAGCagctaataaacaaacaatcaacTTTCTGTTCTCTAGAGATCGTCTGGCTGTGGTGCAGTTAcatgtctcaaagattaaggcGGACAACTTGTGAAGGAGGCTGCAGAACAAGGAGCAAAAGTTGTAGTCTTACCTgaGTGCTTCAACTCGCCTTATGGAACTGGGTTCTTTGCCGAGTATGCTGAGAAGATCCCAGGAGAATCCACACAGGTGTTGTCGGAGGCAGCCAAGGACTGTGGGGTCTATTTAGTGGGCGGTTCCATTCCTGAGAAGGATGGAGAAAAGCTCTTTAACACCTGCTTAGTTTTCGGACCTGATGGAAAGCTGCTTGTCAAACACAGGAAAATTCATCTTTTTGATATCGATGTACCAGGGAAAACATCTAGAAGTCTAGAACACTAAGTCCAGGAAACAGTTTATTCATGTCTGAAACACGACCCGGTAATCTCATCGTCAGTCACATCC

Function

symbol description
nit2 Predicted to enable omega-amidase activity. Predicted to be involved in asparagine metabolic process; glutamine metabolic process; and oxaloacetate metabolic process. Predicted to act upstream of or within nitrogen compound metabolic process. Predicted to be located in cytoplasm. Is expressed in pronephric duct. Orthologous to human NIT2 (nitrilase family member 2).

NR:

description
PREDICTED: omega-amidase NIT2

GO:

id name namespace
GO:0006807 nitrogen compound metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0050152 omega-amidase activity molecular_function
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251163.1 True 1328 lncRNA 0.34 4 18042647 18044630
XR_006251164.1 False 474 lncRNA 0.45 5 18040364 18044630

Neighbor

gene id symbol gene type direction distance location
LOC122346729 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding downstream 11 18028054 ~ 18040353 (-)
LOC122346727 cth,LOC107582733,LOC107685307,LOC107673555,LOC107585163,LOC107585162 coding downstream 16322 18015238 ~ 18024042 (-)
LOC122347583 LOC107711009 coding downstream 43625 17993970 ~ 17996739 (-)
LOC122346430 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 coding downstream 370521 17668187 ~ 17669843 (-)
LOC122346427 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 coding downstream 485125 17553503 ~ 17555239 (-)
LOC122346728 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding upstream 1023 18045653 ~ 18060885 (-)
nit2 nit2,LOC107673472,LOC107585165,LOC107582734,LOC107685305 coding upstream 35004 18079634 ~ 18083673 (-)
si:dkey-66a8.7 LOC107673611,LOC107711100,LOC107685304,LOC107582732,LOC107585166 coding upstream 43430 18088060 ~ 18090531 (-)
plcxd1 plcxd1,LOC107673474,LOC107711026,LOC107585164,LOC107685302,LOC107753403,LOC103035541 coding upstream 46485 18091115 ~ 18096535 (-)
jade3 LOC107711098,LOC107685301,LOC107582729,LOC107753402,LOC107673568 coding upstream 55234 18099864 ~ 18109115 (-)
G46000 NA non-coding downstream 217629 17822536 ~ 17822735 (-)
G45993 NA non-coding downstream 232249 17807621 ~ 17808115 (-)
G45930 LOC107582740,LOC107685313,LOC107722678 non-coding downstream 521759 17514638 ~ 17518605 (-)
G45897 NA non-coding downstream 852570 17187456 ~ 17187794 (-)
G45770 NA non-coding downstream 1717559 16320413 ~ 16322805 (-)
LOC122346732 nit2 non-coding upstream 18151 18062781 ~ 18066949 (-)
G46074 NA non-coding upstream 52438 18097068 ~ 18097490 (-)
G46092 NA non-coding upstream 72726 18117356 ~ 18117582 (-)
G46140 NA non-coding upstream 205304 18249934 ~ 18250635 (-)
G46160 NA non-coding upstream 288213 18332843 ~ 18333266 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 266257 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 626225 17382327 ~ 17414139 (-)
G45910 NA other downstream 731886 17307815 ~ 17308478 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other downstream 793978 17235790 ~ 17246386 (-)
G45895 NA other downstream 853046 17186689 ~ 17187318 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other upstream 599676 18644306 ~ 18645134 (-)
LOC122347235 NA other upstream 661993 18706623 ~ 18707596 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other upstream 669544 18714174 ~ 18717488 (-)
G46478 NA other upstream 1010516 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 1070431 19115061 ~ 19149731 (-)

Expression


Co-expression Network