LOC122346732 (nit2)


Basic Information

Item Value
gene id LOC122346732
gene name nit2
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18062781 ~ 18066949 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251165.1
gactccatttcccataatcccgtgccttggactgattagcgctgccagAGATCGTCTGGCTGTGGTGCAGTTAcatgtctcaaagattaaggcGGACAACTTGTGAAGGAGGCTGCAGAACAAGGAGCAAAAGTTGTAGTCTTACCTgagTGCTTCAACTCGCCTTATGGAACTGGGTTCTTTGCCGAGTATGCTGAGAAGATCCCAGGAGAATCCACACAGGTGTTGTCGGAGGCAGCCAAGGACTGTGGGGTCTATTTAGTTGGCGGTTCCATTCCTGAAAAGGATGGAGAAAAGCTCTTTAACACCTGCTTAGTTTTCGGACCTGATGGAAAGCTGCTTGTCAAACACAGGAAAATTCATCTTTTTGATATCGATGTACCAGGGAAAACATCTAGAAGTCTAGAACACTAAGTCCAGGAAACAGTTTATTCATGTCTGaaacatgtgagtgtgtgttacaGAAATCTTTTCcatgttagaaaaaaaatacagcatattgttgctttttgtcaatacttgatttatttatttttttatcagaatcAATGTCAACAGGTATTAAAAGGCAAGTGTATTTATGTAAGAAAATGCAgtgttaaaattgtattttttgccaCATTCAGTGCTGTGGAATTgagttttaaactaaaaaatgtatgtttgttcTTACAgttacaaatattatttgttttttaaattagttttatttttatgtcacaccataggacacatcAACTACCCATTAATATGTTCTTTAGAagaacagccaatatgctagtaatatgcatgataaCAAGCAACTATAGTTAATGAAAATTGGACACAAATCTAAATCTATaccaaaaaagtaatatttttaaatggacaAAGATAAATATTATCTGAACCTgaagtttttgtaataaatgggaatttgtacattttaaagaagGTTCGATAACGTTTAGTGACCAGTTTgccatgaaaaaaaacccagaaactTATCTAGGAGTCAATATTGTAATATAGCAGAATTAACTATTAGAAGATAAACTATTAATATTGCAAACCAAATTAGATTATATGTACCGTAAAACAATTCAAGGTTCATTTGTGAGATCACAGGCTTTTCCGCTATCATTGTGCTGGTAGATATTAAATTCTGGACTAACCAGTGGGGgtgattaaatattatttagtcaTGGGACCAACAAGTCTGCTGGTGttgcaatttgttttaatagttttctattaaaacaaattgttaaaacaaaacaaaatgttaaatcttTCTTCTTATAAGAGCACCATCTGTGCTCACatcaataaacattcatttatatgcTTC

Function

symbol description
nit2 Predicted to enable omega-amidase activity. Predicted to be involved in asparagine metabolic process; glutamine metabolic process; and oxaloacetate metabolic process. Predicted to act upstream of or within nitrogen compound metabolic process. Predicted to be located in cytoplasm. Is expressed in pronephric duct. Orthologous to human NIT2 (nitrilase family member 2).

NR:

description
PREDICTED: omega-amidase NIT2

GO:

id name namespace
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251165.1 True 1330 lncRNA 0.34 5 18062781 18066949

Neighbor

gene id symbol gene type direction distance location
LOC122346728 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding downstream 1896 18045653 ~ 18060885 (-)
LOC122346729 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding downstream 22428 18028054 ~ 18040353 (-)
LOC122346727 cth,LOC107582733,LOC107685307,LOC107673555,LOC107585163,LOC107585162 coding downstream 38739 18015238 ~ 18024042 (-)
LOC122347583 LOC107711009 coding downstream 66042 17993970 ~ 17996739 (-)
LOC122346430 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 coding downstream 392938 17668187 ~ 17669843 (-)
nit2 nit2,LOC107673472,LOC107585165,LOC107582734,LOC107685305 coding upstream 12685 18079634 ~ 18083673 (-)
si:dkey-66a8.7 LOC107673611,LOC107711100,LOC107685304,LOC107582732,LOC107585166 coding upstream 21111 18088060 ~ 18090531 (-)
plcxd1 plcxd1,LOC107673474,LOC107711026,LOC107585164,LOC107685302,LOC107753403,LOC103035541 coding upstream 24166 18091115 ~ 18096535 (-)
jade3 LOC107711098,LOC107685301,LOC107582729,LOC107753402,LOC107673568 coding upstream 32915 18099864 ~ 18109115 (-)
rp2 rp2,LOC107753404,LOC107711097,LOC107685300,LOC107673570 coding upstream 43697 18110646 ~ 18116377 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding downstream 18151 18040364 ~ 18044630 (-)
G46000 NA non-coding downstream 240046 17822536 ~ 17822735 (-)
G45993 NA non-coding downstream 254666 17807621 ~ 17808115 (-)
G45930 LOC107582740,LOC107685313,LOC107722678 non-coding downstream 544176 17514638 ~ 17518605 (-)
G45897 NA non-coding downstream 874987 17187456 ~ 17187794 (-)
G46074 NA non-coding upstream 30119 18097068 ~ 18097490 (-)
G46092 NA non-coding upstream 50407 18117356 ~ 18117582 (-)
G46140 NA non-coding upstream 182985 18249934 ~ 18250635 (-)
G46160 NA non-coding upstream 265894 18332843 ~ 18333266 (-)
G46172 NA non-coding upstream 292730 18359679 ~ 18359981 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 288674 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 648642 17382327 ~ 17414139 (-)
G45910 NA other downstream 754303 17307815 ~ 17308478 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other downstream 816395 17235790 ~ 17246386 (-)
G45895 NA other downstream 875463 17186689 ~ 17187318 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other upstream 577357 18644306 ~ 18645134 (-)
LOC122347235 NA other upstream 639674 18706623 ~ 18707596 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other upstream 647225 18714174 ~ 18717488 (-)
G46478 NA other upstream 988197 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 1048112 19115061 ~ 19149731 (-)

Expression


Co-expression Network