LOC122346816


Basic Information

Item Value
gene id LOC122346816
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13101279 ~ 13103566 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251171.1
aattacacaGTGTTTTGAAAGAGTTAAATTCTTCCCTTTCAGTGAAAGCCTGATGTGTTAAGAGTGTGACGGTGGGATTTGATTACTTGAACAGCACCTGGCATCTTTTTCCGCAGATTTgaaaattgacttttttaaaggaacaaaTTCGTCTACAAGAGCAGCTGAAAGCAGCAGCGGTCCTCACGGAAATTAGCACAGTCACTTGGGGAAAAATCTTTAGTGactcagagacagagacacCTTGGAGGGCTAATAGAGTTTTCGAGTTTTAGTTTATGAGGAAAACCACTCgcacaaaacaacagaaaagcaTAAAGGAGGCCACCGCGCATCTAGTTTAACCAGTTAAGAGATACGGGACGTGCTGAAGGAAGGAGGAGCTGATAAGGAGCTAAAAAACCAAAGGGAGGAAAGAATTCGGTGTTTTggaatttttctgtttttttcccccctcaagCAAAGAACGTTCTCTGAGTCCTGCGCCACCTGGTGGTGAAAACGTTCCTCCGGAGCGAGTTACGCTCTCGTTCTGTATCTGTACAGTGTTCACTATGTAGGTTAAGACCGAGCCGTTCTTCAGAGCGTCTGCTTCGTCCTCCAATTACAAACATCACACAGATCACGTTTAACCTCTAAAGCCTCCGTTCGAAGCAATAACAGTGACTCAtactttttctcattttcttgcTTCAGAGAACGCAGAGCGGACTGGAAGGCAGGAACGccgaaaatgtgaaaatatgagtctttttttttttttttctccttcgtAATCCCACCCCTTTAGCACCCTCTAAACCTATCATGAACTAGTTTTCGAAACAGCCCATTTGTTGTTGTCATTGTCTTAAAGTGTCAAGGGAGCGGGGTCGATCGTTATCAGAGAAATGCGGTTCTCCGTGTTCCGTCCCAAGAGTTCAGATCCGCAAACCGAACATGCAACAAAGATTCGCTTATGTTTTTGTtgcctttaaaaa
>XR_006251172.1
CAGTCTGGAGGTTTTGCATGTGAGCTGATCAGCACAGGATGTCACAGCCCGAACAGCGGTAGGCGGGGTGGGGGGATGATGCAGAGTGTTGGAGGTACTGCTGCTTTGCCTACCTCGGTAACGTGTGTGGGTATGCTGTCTGCGAGCGAGGCCTGGCATGGGGGGTTGGGGCGAAGGCACACATCTGCCACATGAGCGTCCTCAAACAACCTGCTGAAGATGCGTATGTCACGCTGCATAAAGTTTTGGAGTTATTGATTCTTCCTGATAACGCCCGTAGTAAAAGAGGTTACGtatttaattagcttttttggTGTAGcgtagtttttcattttaggcgTTACCGCATTGCCACTATTTTCAGAAGCGACTGTGTCTTTAACTACTcgtgttaatattatatttgacaGTACACCTTTCTGCGATGACACGtgtaattattttctgtgaTTACATTGTCGATTCCGTGCCTACACCTTAAACCTAACCATATGCCGCCTAACCTGTCCATAACCTCAACCACACCCAAGCTTTTTCTGCAATTCAGTTCAACACGAAGACAACAGATTTgaaaattgacttttttaaaggaacaaaTTCGTCTACAAGAGCAGCTGAAAGCAGCAGCGGTCCTCACGGAAATTAGCACAGTCACTTGGGGAAAAATCTTTAGTGactcagagacagagacacCTTGGAGGGCTAATAGAGTTTTCGAGTTTTAGTTTATGAGGAAAACCACTCgcacaaaacaacagaaaagcaTAAAGGAGGCCACCGCGCATCTAGTTTAACCAGTTAAGAGATACGGGACGTGCTGAAGGAAGGAGGAGCTGATAAGGAGCTAAAAAACCAAAGGGAGGAAAGAATTCGGTGTTTTggaatttttctgtttttttcccccctcaagCAAAGAACGTTCTCTGAGTCCTGCGCCACCTGGTGGTGAAAACGTTCCTCCGGAGCGAGTTACGCTCTCGTTCTGTATCTGTACAGTGTTCACTATGTAGGTTAAGACCGAGCCGTTCTTCAGAGCGTCTGCTTCGTCCTCCAATTACAAACATCACACAGATCACGTTTAACCTCTAAAGCCTCCGTTCGAAGCAATAACAGTGACTCAtactttttctcattttcttgcTTCAGAGAACGCAGAGCGGACTGGAAGGCAGGAACGccgaaaatgtgaaaatatgagtctttttttttttttttctccttcgtAATCCCACCCCTTTAGCACCCTCTAAACCTATCATGAACTAGTTTTCGAAACAGCCCATTTGTTGTTGTCATTGTCTTAAAGTGTCAAGGGAGCGGGGTCGATCGTTATCAGAGAAATGCGGTTCTCCGTGTTCCGTCCCAAGAGTTCAGATCCGCAAACCGAACATGCAACAAAGATTCGCTTATGTTTTTGTtgcctttaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251171.1 False 980 lncRNA 0.43 2 13102272 13103566
XR_006251172.1 True 1430 lncRNA 0.45 3 13101279 13103566

Neighbor

gene id symbol gene type direction distance location
inpp5d LOC107694111,LOC107590654,LOC107717933,LOC107696774,LOC107552268,LOC107752650 coding upstream 21233 13065838 ~ 13080046 (+)
gpr17 gpr17,LOC107752663,LOC107717943,LOC107694121,LOC107590682,LOC107552259,LOC107696754 coding upstream 36850 13058859 ~ 13064429 (+)
LOC122346752 LOC107590657,LOC107694127,LOC107717944,LOC107696773,LOC107752637,LOC107552269 coding upstream 43158 13039523 ~ 13058121 (+)
sap130a sap130a,LOC107696772,LOC107590658,LOC107717942,LOC107552246 coding upstream 62999 13024547 ~ 13038280 (+)
amotl2a amotl2a,LOC107717938,LOC107694113,LOC107752638,LOC107590659,LOC107696770,LOC107552270 coding upstream 86878 13004991 ~ 13014401 (+)
LOC122346939 lpp,LOC107684332,LOC107590653,LOC107717931,LOC107696776,LOC107752632,LOC107552245,LOC108427685 coding downstream 15629 13119195 ~ 13279180 (+)
tprg1 tprg1,LOC107590652,LOC107751286,LOC107684336,LOC107552257,LOC107696755,LOC107752662 coding downstream 210491 13314057 ~ 13333574 (+)
tp63 tp63,LOC107574491,LOC107590651,LOC107659018,LOC107752631,LOC107696778 coding downstream 246955 13350521 ~ 13390651 (+)
LOC122347353 LOC107731845,LOC107659022,LOC107692422 coding downstream 365838 13469404 ~ 13471933 (+)
rpl5b rpl5b,rpl5,LOC107659024,LOC107590646,LOC107732018,LOC107566486,LOC107692344,LOC103368809 coding downstream 432945 13536511 ~ 13542567 (+)
G44640 NA non-coding upstream 5369 13093856 ~ 13095910 (+)
G44615 NA non-coding upstream 17049 13083380 ~ 13084230 (+)
G44622 NA non-coding upstream 401702 12664820 ~ 12699577 (+)
G44611 NA non-coding upstream 429614 12564092 ~ 12671665 (+)
G44606 LOC107593190,LOC107696746,LOC107552261,LOC107753661,LOC107694109,LOC107752664 non-coding upstream 607637 12492953 ~ 12493642 (+)
G44872 NA non-coding downstream 209987 13313553 ~ 13313854 (+)
G44873 NA non-coding downstream 231623 13335189 ~ 13335542 (+)
G44869 NA non-coding downstream 233352 13336918 ~ 13338450 (+)
G44874 NA non-coding downstream 235468 13339034 ~ 13339305 (+)
G44876 NA non-coding downstream 238910 13342476 ~ 13342840 (+)
smx5 lsm2,LSM2,smx5 other upstream 19160 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 295579 12765821 ~ 12805700 (+)
LOC122347491 LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 other upstream 574322 12521773 ~ 12526957 (+)
scly scly,LOC107552249,LOC107552250,LOC107752645 other upstream 941380 12154268 ~ 12159899 (+)
G44588 NA other upstream 1008824 12087399 ~ 12092455 (+)
G44645 NA other downstream 5169 13108735 ~ 13109366 (+)
G44887 NA other downstream 290663 13394229 ~ 13409912 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other downstream 868607 13972173 ~ 13980286 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 2132599 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 2255295 15358861 ~ 15459386 (+)

Expression


Co-expression Network