LOC122346901


Basic Information

Item Value
gene id LOC122346901
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10662120 ~ 10663689 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251182.1
gtcccTCCCTCACATTCACTCAGCTTTGAGTCAGAGTTGCAGTTGTCCTCAGTGACAGCCGCAGCAGTTAGAGGAAGTGTTACATAGTGTGCAGCTCTAAGTCTAACCGCTTGGCCAGCACAAGTTTTTATACATGTGGCATATGATGTAGTCCACTGATAGTCGCACAAGGACGAAAGTTTACCTCATTATGTAAGGACCAAGCCACAGCATGGCATCCTGGAGAAACTCTTGCAGTATTAATGCGGGGATTCGGCAGCTGAATATGCTGCCATTGAATCTGAAATCTAC

Function

GO:

id name namespace
GO:0044459 obsolete plasma membrane part cellular_component
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251182.1 True 291 lncRNA 0.47 3 10662120 10663689

Neighbor

gene id symbol gene type direction distance location
stx8 stx8,LOC107704006,LOC107555374,LOC107733906,LOC107569362,LOC107660464,LOC107757428 coding upstream 83315 10523980 ~ 10578805 (+)
mchr1a mchr1a,LOC107704000,LOC107728182,LOC107733891,LOC107561025,LOC107659856 coding upstream 231582 10427591 ~ 10430538 (+)
rhot1b rhot1b,LOC107669542,LOC107710015,LOC107553301,LOC105892309,LOC103373013 coding upstream 520513 10130646 ~ 10141607 (+)
LOC122346392 NA coding upstream 531577 10126776 ~ 10130543 (+)
suz12b suz12,LOC107710018,LOC107553303,LOC107669539,LOC107591916 coding upstream 545839 10107180 ~ 10116281 (+)
LOC122347357 LOC107733903,LOC107704004,LOC107555376,LOC107569359 coding downstream 174759 10838448 ~ 10858010 (+)
glulb glulb,LOC107555380,LOC107733907,LOC107704001,LOC107757425,LOC107660462,LOC107569358,LOC102795441,LOC105019150 coding downstream 237317 10901006 ~ 10904025 (+)
znf648 LOC107678353,LOC107555382,LOC107733900,LOC107719322,LOC107660466,LOC107564440 coding downstream 258979 10922668 ~ 10930433 (+)
gadd45ab gadd45ab,gadd45a,LOC107555372,LOC107678351,LOC107670797,LOC108272203 coding downstream 280063 10943752 ~ 10946264 (+)
tgfbr3 tgfbr3,LOC107749982,LOC107555391,LOC107564431,LOC107675425,LOC107678350,LOC107730687 coding downstream 409486 11073175 ~ 11162716 (+)
G44252 ntn1a non-coding upstream 62056 10599748 ~ 10600064 (+)
G44248 NA non-coding upstream 78439 10582349 ~ 10583681 (+)
G44245 NA non-coding upstream 107525 10521974 ~ 10554595 (+)
G44246 LOC107733892,LOC107555367,LOC107703995 non-coding upstream 138898 10516890 ~ 10523222 (+)
G44225 NA non-coding upstream 218044 10434521 ~ 10444076 (+)
G44297 NA non-coding downstream 327681 10991370 ~ 10991602 (+)
G44298 NA non-coding downstream 332719 10996408 ~ 10997516 (+)
G44301 LOC107577034,LOC107675434,LOC107564434,LOC107730699,LOC107678357,LOC107733908 non-coding downstream 337002 11000691 ~ 11001355 (+)
G44440 NA non-coding downstream 552358 11216047 ~ 11216274 (+)
G44443 NA non-coding downstream 557940 11221629 ~ 11222047 (+)
atad5b LOC107578257,LOC107710017,LOC107669538 other upstream 538595 10116617 ~ 10123525 (+)
dgke dgke,LOC107669536,LOC107710025,LOC107710026,LOC107669537,LOC107553311,LOC107591925,LOC107701198 other upstream 621756 9979865 ~ 10040364 (+)
LOC122346828 mcrip1,LOC107710264,LOC107553315,LOC107710031,LOC107591941,LOC108424716 other upstream 714191 9944518 ~ 9947929 (+)
pecam1b NA other upstream 735863 9916050 ~ 9926257 (+)
G43962 rptor,LOC107728013,LOC107700860,LOC107553319 other upstream 850545 9786840 ~ 9811575 (+)
LOC122347096 LOC107704003,LOC107733914,LOC107555377,LOC107569363,LOC107660471,LOC107757423 other downstream 206689 10870378 ~ 10882899 (+)
pik3r6a zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC105903457 other downstream 219271 10882960 ~ 10892460 (+)
G44478 LOC107749977,LOC107730703,LOC107675437,LOC107564626,LOC107698886,LOC107555394 other downstream 751584 11415273 ~ 11420330 (+)
LOC122346564 LOC107733248,LOC107694106,LOC107576895 other downstream 1338458 12002147 ~ 12010539 (+)
G44588 NA other downstream 1423710 12087399 ~ 12092455 (+)

Expression


Co-expression Network