LOC122347045 (gnat1,LOC101072412,LOC107750245,LOC107657824,LOC107385205,LOC107666988)


Basic Information

Item Value
gene id LOC122347045
gene name gnat1,LOC101072412,LOC107750245,LOC107657824,LOC107385205,LOC107666988
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 21137473 ~ 21142766 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251191.1
TTCATAGTTGTGCTTGAGGACGTTCTTTGTATTTTAGGCGTACCTGAAGTTGAGGTCCTTGAAGGAGAACTGGGTCTCGATGATACCGGTGGTCTTCACTCGTGAACGCAGGACGTCCTGCTCAGTAGGGACATAGCCAGAGTCGTTGAGCTGGTATTCGGAGGCTCTGTCAAAGCACGCCTGGATGCCCGAGTCCTTCCACAACCTCAGGATAATGTCAGACAGCTCTTTTGGCATGGTGCCTTCCTCGATGGTGTCTGCTAAGTGCATCAACCTCCTTGCATCATCCTGCAAAAAAGTAATCAATGTCATGGTGACACATGTTTTTacttaactttttaaaactcatatcatcttcattttttaagtaatacaGGATTCAacttgatattttaaataagcaatTTGATTATAGGTTTTTAAGTAAGGGTTTTTTCAGCTTGTAACTAAAGGTGTTTAAGTATTAGCTACCATCCAGACTTCTCTATAGTGATATGGAAATTCACtgttaacaaaaacaatgtttttaaaaataatgaacacgTCCTGAATTTATAATACATTGTTTGCTATCAGGTGAATTTAGTAATTAACCACATTTACACTTGGTTGTCATCACAAACAAGTCAGTTACATTTACTACTCTAGCTACATgccatgtgttttatttcttatcctgaagtattttgaattataacaaagaaacaaaaagtaccATGGTATGGTTATATTTGGACCTACTTTGTACTTTATGTTTCTTTAACTACTATATACTAGCATTTATAGTTGATTCAATTTATTGTGTTTGCCACATCTGTAATTAACTCCATTGAACCTACCTCTaccaaacaatgtttttgacaTGAACACAAAGTAGTTCAACACAACACAGTGGGGTCACATATTTCGGGACAAAGCAGATAAGTGGTATCTTGGACAGGTGCATATGATAATCATTTAATACTGGTCTTATGACAGTTCTTTCccatcatttaatgttttaatttctgtaaatgACCAATGCATGTTTGAATGTTTGGGTAGAGCACCTGCGCAGCAGCATCTCCATAGGAAATGTTGAGTGTGGTCATGGCTCTCACGATGGCCAGGATCGACTGCAGGGTGTTGCTGTAGATGATGACAATGAACTCCAAGCACTCTTCAAGGGAGTAACCATCTTTGTGAATAATTCTGTCATAGGGGAAAAAAGGTTTTCATCAGAAGGAGCACTAATTAGGAATTAATAGTGATTATAGTCTCACATAAGGcaattcattattatatatttttctttagcaCTTACTTCATCTGTTTGACGATTGTGCTTTTCCCTGACTCACCAGCACCTGAAGAAGAAAGTAATCAATTTAGTGTTGCAgttatttcaatatatacacatacatatattattcctgtcatggcaaagctgaattttgccATTCATTCCTCATTATCATAtggttcttcagaaatcattctaatatatctgatttggtgcttaagaaccattttattatcactgttgtaaactttttaaaatacaacttaatatttctgtgataaacagtaaacagtgatgtgtttttttttagcaccatTTGATAAACAGAACTTGATTTGACAAAAATGTGATAATCCTTGgttgctttttcttttactctGTCTATATTAGATCACATTACATTCACATACTCCTATAAACATCAAATTCTAGATTATCAGCCAACCcctaatattattaaaaaacacattttattacatccaaatttgaaaaatgaaaaaatatatttaacaaatgtatAACAATTTTAGCCATCTGAAAACCACAGATCGACTATTTGCCAGTGATTTGAGGGGTAAAACTGTAGACATTCACCcaagtaagatttatttattgaagcaTGCAtatgtgcattaataaatacatcCTTCTTCTATGCAGTTTATCTTTTGGAGGATTACATTAAGAAGCTTGAggcttattatttttgtcttaagCCTTGTCCAAGCTTGACGTCCTATGACCCTGACCCACATCCCCTCACAAAGACGCATGTTGTTATGATAGACAGAGATATAacttttgtgaatatatatgcatactttCATGGCATATGGCATGCAAGTCACTTTTTCAGTCTCTTGCAATAACATTTAGATATCAAGAAATATCACATTTAGTCATAAATTTTCTTCTTGCATTTGAACTTgacaaatatgacatttttatacaagcaaaaaaaaagataaaatattacatttattttgtaatctcTATGGCCATGATGTGAAGTCATTGCCTGTTTATGATGAAGTTTAAAATGGTAAGGCAAATCTGCAAATATCTTCCCAATCTAGCAAATGAGTTATTCTTAATGTTTTGACTTGAGCAATCATTTGAGTCCGCTTGTGTGTTGTTACCTAGCAGCAGAAGTTTGACGGTCCTGGCATCTTTGTCGGCGTCCTCTTTCAGTTTCTTCTCTAGCTCCCTGGAGTGTTTCTCCTCGGCGCTCGCCCCGGCCCCCATACTGACTCTCGATTAGGGAAAAGAAGTCCTTCTGGATGACCACTCGCTTGCCCAGAGGCCTCCAGGTGCTCACAGCTCACACCTCGACTGGATCTTGGTGACCTAATGAATTGTTTGGAGTCTTAGAGGGATTTTGGAGATGTCTCTGACCACCTGGGTTGGTGGGGCCAATGAAGAGCAAGGACAGAAGGCATTGGAAGCGCGGAGAGGTCATCTAACCTCAGATTTGAGGAGAAGGTGCTGTGCTCAGCAAAAGGTGGTAATCTGGCCAGCGTTTTCACGAGCACATTAGAAGGGCCATAGAGACAGTGAGTGAAATAATGTGACGTTACTAACatcacttgtttgtttgttatatatttaagagagaAACTAACGGTAAACGGGTCTCATAAATGATTGGATATGTTGGCTTTCCCATATCTATATTCTGTTGAAAATGGGCTTAACTTCaagaaaaaagaacaacatcTCTATTCCCTACAGTTTGGGCTTTATCAGTAGAACTTTTACTGAatgcaaagctgtttttaaagatgaatattACATGAGTAATTCTAATCTCACTTTCCCACTGTAGTCATCAGGATCAGTTGACATTTTCCTTGTTGTGGACACAGTGTGCAGAGCAAGTGTTTAAAGAGCTTTAGTCTTTTACGTGACAGAGCTCATTGACCCCAATCTGAAGATTGATACATTTTAATCCACAGGCATCACATGTGAGAGAGAGGCTTTCTTCATTAGAAACAGTAGCGATTCATTTCAATattatgaaagttttttttccccaagttaATCATCATAAAAactagtatttttattgtatgtaaCTTTTGTCACATACAATTACAAAATCTCTTTCTTGGCAAAGAAATGTTATCCATAAAACATCTATTACACAAATGGTTCTTTAAGATGGAAAAGGTTTTTAAGATGTTCttcatgcaagaaaaaaaaaatagtttaagaaCTCCTCGCTGCATGGGTCTTTGGAGAACCAAAATTGGTTCTTCTTTTGGAACTTTTGCTTTTAAGAGTCtgataatgacaaaaatgtttgatAGATTTATCAGTTTGTAATCCAAAAAGAAAGTTCcgtttgtgttttttctattCAGTGATAAGATTTGTACAAAATAAGtacacaaatattaattaaaaataatgtgttacgTGTTTGCTAGTAGCAAAAGTGTTAGccattttctctttctatttAGACAGAAAGGTGAAATGAATGGCAGAGGTGAAATAGTGCAGCATAAAATCTTCTAAACTGAactttatatatactatatatacaaaTCACACTTGATCTTGTGAATGACAATGTAAAGTTCGCGAACAGTTTAAATCAAGTAAGCAAATAAGACCAACTTGCGAACCTATTCCTTATTCACTCAAACCTTTTTGGTTACATCGAGACTGCAGAAGAAAAGTACAGGTATAAGTATAGGTTCACCCAGTGACATTTACTCAAAAGCCAACCTgtatttgttataaaatatataactttaattAGTCAACAACaacgatgaaaaaaaaactaaacaaataaaaaatacattactataatattaacTGTTCATAACATCTAATTCTGGATCTTTTTCACATTAGAATATcctaaaaaagacaaaacaagggGACAAACCACAGTGATGAATAATGTgttacaaatgaaagaaaaaaatacatttacaacaaCCATTTCACACAGCCCGTTTGCTATGCGTGTTGAGAAAACGCAACGGAGGCCAAACAGACACATCAGGTAATTGTGCTTGATTCCATCACTAGTTCGGCAAAGTCCTCTGTCTTTAGAAAACAGTCTCTCTCTCGATTCATTATGTCAAAGACCATACAGCAACACAGCAATATCCAGAATTTGACTACATATCTGTACAGTACAAATACAATTCATGCAAACTCAAACAAGCCCCCAAATGATTAATGCTTCCAAATGATCACCTATTAAATGTTTAGAGGTGCTTGCAATGGACGCTTACTCTGGAGAggtacatatttaaaaacgaTTCTGCTTTGCAAAAAGATGGAGAGGTTTTGAACCCCCAgctttttgagattttttgcGTGCAATAGTACGTATTTATATGAATGAAAAGGACAAAAAGAAGTGATGTACATACTGTACAGGAGGCTGCAATCAATAATAAACCAAACGGATAACACACAGAAACGACTTTATATTTAACACACATTAGCATAGCAACATATGGAAGATCAAGAAGATTAAAAGATGAGTTTCCAATGATATTAAAGAGTTTTTCCAAGTCTTTTGAGAGGTCACAGAATACTCAGATGCATCAAATATATGTAGAAATCCTTTATCCGTACATCTGCAGAACGAGAACACGTGCTTGGCTAAAACAGTCCGCTAAATGTACGACGGCTTCAGTCCCATCTTTCCTCTGGTATCAAAACATCAAGTGCAGTCGAACTGTCCATCAAGAGTTTCCGACTATCCGGTTAATGGTATATACATCAAGTTTTATGATAACAGTCACAtggtgtattattattattatgcgaATACcgttgtaataaatatattggaAGAAAA

Function

symbol description
gnat1 Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in G protein-coupled adenosine receptor signaling pathway; adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway; and response to light stimulus. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be part of heterotrimeric G-protein complex. Is expressed in pineal complex and visual system. Human ortholog(s) of this gene implicated in congenital stationary night blindness 1G; congenital stationary night blindness autosomal dominant 3; and night blindness. Orthologous to human GNAT1 (G protein subunit alpha transducin 1).

NR:

description
PREDICTED: guanine nucleotide-binding protein G(t) subunit alpha-1

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0001580 detection of chemical stimulus involved in sensory perception of bitter taste biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0001917 photoreceptor inner segment cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251191.1 True 5111 lncRNA 0.35 2 21137473 21142766

Neighbor

gene id symbol gene type direction distance location
ip6k2a ip6k2a,LOC107713495,LOC107666997,LOC107657877,LOC107750247,LOC107573738,LOC108436274 coding downstream 181266 20949489 ~ 20956207 (-)
sec61a1l sec61a1l,LOC108436273,LOC108440718,LOC107713494,LOC103023094,LOC103358725,LOC103036990,LOC107750248,LOC107657870 coding downstream 195574 20936075 ~ 20941899 (-)
emc3 emc3,LOC107667035,LOC107584459,LOC107657885,LOC107750250,LOC101173295 coding downstream 202280 20932061 ~ 20935193 (-)
usp4 usp4,LOC107584456,LOC107667006,LOC107573741,LOC107657902 coding downstream 206159 20918338 ~ 20931314 (-)
fancd2 fancd2,LOC107750252,LOC107749611,LOC107573736,LOC107584458,LOC107666962,LOC107673444 coding downstream 222195 20900369 ~ 20915278 (-)
edem1 edem1,LOC107750244,LOC107552651,LOC107657818,LOC107666987,LOC107713500,LOC107584463 coding upstream 2899 21145665 ~ 21153157 (-)
arl8ba arl8ba,arl8b,LOC107095653,LOC107552649,LOC105934196,LOC103137213,LOC107667033,LOC103362565,LOC104920499 coding upstream 11058 21153824 ~ 21161171 (-)
tnfrsf18 NA coding upstream 18866 21161632 ~ 21164185 (-)
si:ch73-361p23.3 NA coding upstream 27321 21170087 ~ 21176003 (-)
glyctk glyctk,LOC107584466,LOC107713503,LOC107667023,LOC107750240,LOC107552647,LOC107657765 coding upstream 34862 21177628 ~ 21181849 (-)
G47004 NA non-coding downstream 201819 20935422 ~ 20935654 (-)
G46934 srgap3,LOC107657972,LOC107712067,LOC107750258,LOC107673571 non-coding downstream 430624 20564351 ~ 20706849 (-)
G46922 NA non-coding downstream 445310 20498222 ~ 20692163 (-)
G46929 srgap3,LOC107657972,LOC107750258 non-coding downstream 538338 20554033 ~ 20599135 (-)
G46883 LOC107673597,LOC107712118,LOC107584452,LOC107567071,LOC107657992,LOC107567092,LOC107750261 non-coding downstream 714743 20419765 ~ 20422730 (-)
G47122 zgc:113054,LOC107584471,LOC107713510,LOC107666963,LOC107750276,LOC107599438,LOC107680730,LOC108424032 non-coding upstream 185666 21328432 ~ 21329671 (-)
G47262 LOC107573738,LOC107657877,LOC107713495,LOC107666997,LOC107750247,LOC108436274 non-coding upstream 459523 21602289 ~ 21663492 (-)
G47283 NA non-coding upstream 657512 21800278 ~ 21801032 (-)
G47297 NA non-coding upstream 862014 22004780 ~ 22004982 (-)
G47306 gxylt2,LOC107713518,LOC107666964,LOC107584478,LOC107732048,LOC107599434,LOC107680697 non-coding upstream 904344 22047110 ~ 22047735 (-)
G46926 NA other downstream 605639 20529179 ~ 20531834 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other downstream 971194 20161440 ~ 20166279 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other downstream 1035014 20096024 ~ 20102459 (-)
mustn1a mustn1a other downstream 1136835 19998632 ~ 20000638 (-)
LOC122347177 LOC107584418 other downstream 1180743 19899672 ~ 19956730 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 205853 21348619 ~ 21355381 (-)
tardbpb tardbp,LOC107713527,LOC107555974,LOC107666995,LOC107680706,LOC107561006 other upstream 1597206 22739972 ~ 22750947 (-)
G47535 LOC102793276,LOC101471251,LOC100701884,LOC102312415,LOC102199361 other upstream 1979017 23121783 ~ 23163157 (-)
G47590 NA other upstream 2256583 23399349 ~ 23400502 (-)
LOC122347542 grm8b,LOC107659486,LOC107698172,LOC107752348,LOC107575719,LOC107598887,LOC107753676 other upstream 2510423 23653189 ~ 23656456 (-)

Expression


Co-expression Network