LOC122347324


Basic Information

Item Value
gene id LOC122347324
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15231824 ~ 15233054 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251210.1
aaatgtaacaaatgattttccttgaacaataacacacaaacaatggtGACTAAAAACACACTTGCCCTTAAACATTTAGTATAGTAgtggaaattaaatataattaaataaaatttaagttgttgaaattttcagaaaaaaggcatttcagaaacctgaaaattgttgttgattttgtttcagTGAATACACCAACAAGATCCTCGACCCCCAGCACATGCACTGATACTCTTTCAGTCTCTTCAGCTGACTATGATGAGGCAGACATAGCAGTGAACAGGCAGTCTCCACGGGCTTGCAGCAGAGAGACATTGGATGCTGAAAAGGCAAAACAGACTATCCAAGATGCCCTGGAAAAACAATCTGGTGGTGAGGAAGTTTTGGAGGAATACCAGGTAACTAAAACTTTGAAGCACAGCACCAGACGCCAACTTGTCAATATTGTTGTCAGTCACATGACAGAGACTTACGGGAGGATCCCCACCCGCAAACAGCGTGAGACTTATGCTTTAGGAATTGTTAgtctctttccttctttgagAGACCCATTTTCAGCAAAGGGCTAtgaacatttttatgATCCAGAGAAGGGGACCGGGTTTATCTCTTGGCGCCTTAAAACTTTGTCAAGGAAGAACCCAAAACGGGGGCGCTCTGAGATTTTTGAAATAGGAGGACCAAGTCGCCGAAGAAGAGTAGATGATGGAGAACAGCTTTTTACTGAACACTTCTCAGAACATTACCATGCATTTAAAGTACAGAGATGCTGCGGTGTGAGTGGACTTCTTAAGGCCAGTGCTTTGAAATTCTACAGACCTTTTGATCTACAAATTCCATATGGGTCAGATGGTGAATATATTGTACCTTTTTGTAtgttggtttaagctggttggttgactggttgcgtgatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251210.1 True 911 lncRNA 0.41 4 15231824 15233054

Neighbor

gene id symbol gene type direction distance location
ghrhrb ghrhrb,LOC107704523,LOC107692395,LOC107556991,LOC107731650,LOC107717144 coding upstream 47158 15162993 ~ 15184666 (+)
cyldl LOC107556989,LOC107731632,LOC107704521,LOC107692392,LOC107717142,LOC107594643 coding upstream 77202 15148130 ~ 15154622 (+)
kank4 kank4,LOC107731645,LOC107704518,LOC107717130,LOC107692389,LOC107556542,LOC107591186 coding upstream 223755 14964912 ~ 15008069 (+)
dock7 dock7,LOC107591182 coding upstream 274621 14915866 ~ 14957203 (+)
LOC122347452 LOC107692384,LOC107739088 coding upstream 441632 14780926 ~ 14790192 (+)
LOC122346435 wdr78,LOC107590676 coding downstream 100976 15334030 ~ 15340136 (+)
pfkfb4b pfkfb4b,LOC107711047,LOC107673509,LOC107748389,LOC107585116,LOC108440764,LOC103024058 coding downstream 412966 15646020 ~ 15657188 (+)
LOC122347276 sumf1,LOC107673603,LOC107585117,LOC107667304 coding downstream 450512 15683566 ~ 15691034 (+)
LOC122347482 tsfm,LOC107711018,LOC107585120 coding downstream 462572 15695626 ~ 15697839 (+)
LOC122346397 pomgnt1,LOC107675946,LOC107692396 coding downstream 513020 15746074 ~ 15753735 (+)
LOC122347325 NA non-coding upstream 78 15230821 ~ 15231746 (+)
G45371 NA non-coding upstream 117173 15099837 ~ 15114651 (+)
G45364 mafa,mafaa,LOC107717140,LOC107591187,LOC107556987,LOC107731633 non-coding upstream 145295 15010246 ~ 15086529 (+)
G45333 foxd3,LOC107717135,LOC107591180,LOC107731647,LOC107692383,LOC107704516 non-coding upstream 418145 14805305 ~ 14813679 (+)
G45312 pgm1,LOC107704513,LOC107731639,LOC107556550,LOC107692428,LOC107739071,LOC107591179 non-coding upstream 463842 14766645 ~ 14767982 (+)
G45400 NA non-coding downstream 42561 15275615 ~ 15344414 (+)
LOC122346981 NA non-coding downstream 228908 15461962 ~ 15462420 (+)
G45421 NA non-coding downstream 253320 15486374 ~ 15487892 (+)
G45447 NA non-coding downstream 277686 15510740 ~ 15577035 (+)
G45456 NA non-coding downstream 347208 15580262 ~ 15583406 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 1251538 13972173 ~ 13980286 (+)
G44887 NA other upstream 1821912 13394229 ~ 13409912 (+)
G44645 NA other upstream 2122458 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 2149705 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 2426124 12765821 ~ 12805700 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 3111 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 125807 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 331927 15564981 ~ 15566668 (+)
G45894 NA other downstream 1953654 17186708 ~ 17187308 (+)
G46022 NA other downstream 2762137 17995191 ~ 17996717 (+)

Expression


Co-expression Network