LOC122347350


Basic Information

Item Value
gene id LOC122347350
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13823672 ~ 13835591 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251212.1
TTGATCAAGAACTTAGGCTACCAAGTATGTTATTTAGTTATATTCAGACGTATATTCAGACGCATATAGCCCATGTTGCCATTTTCCTTTAACTTGTGTTTTTTGCGGTTGTTAAAGACAATTTAATCATCAGTGACAACTTCTGTGTTACCAGTTCTATCTATTCAGAATGTCAGTGTTTTATCATCTGAATACTGAATACGTTTTTGGACATCTTCGCAAGGTTGCTATTAACAATATAGTCTGGCTGACCTATTTGTTCAGCGTGGAAGTCTATAAGTCTTAAATATTACTCTGCCCTCGCTGTTTTTCATTCTTCTCCAGCTCTGATTATGCTGGTCctcaaaataaatacttgttCTCAAGTTAATTTTACCACTGGGGCCTCGACTGTTCCCAGCTGTCCCTCCTCCCATCCACTCTTGAACTGGTCCCTGACCATACATGGTCTTAGTTGAAGAAAGCGGCAGGCCAAGAGAGCTAGGAAGAAGTGATCTGCCACTCATACAAGCCTGTGTGTGAAAGGGAGGACTCGGTAGCGCTGGCCATGTTACTCCCCCACCGCAGAAATTTACACTGTAATAGTGTAGAGCTAAAAATAGGTACCAGATGTCTGTCTGAGCTGCCACACTTTCTCAGGCAACAGAGGTGAAGCATGGAACGTGTGGAAATTCCCCTCCAGAAATCCACTGACAGATGTGGTTTCTGCTGAATTCTAACGGCGGGTCAGTACATCAGGAGGAAGGCCGACGAAGAGTAACTGGAActctaaatacaaataaatctcaACCGTATCAGAAAACAAGGCTTATTGgAAAGACATAAATCATTCCTAGGAAAAtggatggatttattttttctcaacCAACCTTGAGCTCATCTAATGTATGATTTAAAGACATGTTTCCTGTTATGACAATCACCGTCGAAAAGCATTACATGGTCTGGTA
>XR_006251213.1
TTGATCAAGAACTTAGGCTACCAAGTATGTTATTTAGTTATATTCAGACGTATATTCAGACGCATATAGCCCATGTTGCCATTTTCCTTTAACTTGTGTTTTTTGCGGTTGTTAAAGACAATTTAATCATCAGTGACAACTTCTGTGTTACCAGTTCTATCTATTCAGAATGTCAGTGTTTTATCATCTGAATACTGAATACGTTTTTGGACATCTTCGCAAGGTTGCTATTAACAATATAGTCTGGCTGACCTATTTGTTCAGCGTGGAAGTCTATAAGTCTTAAATATTACTCTGCCCTCGCTGTTTTTCATTCTTCTCCAGCTCTGATTATGCTGGTCctcaaaataaatacttgttCTCAAGTTAATTTTACCACTGGGGCCTCGACTGTTCCCAGCTGTCCCTCCTCCCATCCACTCTTGAACTGGTCCCTGACCATACATGGTCTTAGTTGAAGAAAGCGGCAGGCCAAGAGAGCTAGGAAGAAGTGATCTGCCACTCATACAAGCCTGTGTGTGAAAGGGAGGACTCGGTAGCGCTGGCCATGTTACTCCCCCACCGCAGAAATTTACACTGTAATAGTGTAGAGCTAAAAATAGGTACCAGATGTCTGTCTGAGCTGCCACACTTTCTCAGGCAACAGAGGTGAAGCATGGAACGTGTGGAAATTCCCCTCCAGAAATCCACTGACAGCACCGGTCTAGGTTGGACCCAGTGGTGTTCATTATCAGCTTCATTATCAAACTGAAGGGCATCAGATGATGTGTGCAGACTGTCTTACACATGATGCATGTCAAACTAGGACACAATTCCCCAATGTCACTTAGCACTTTAAAGACTACAGAGAAGGAGAGGGGGAAGATGTGGTTTCTGCTGAATTCTAACGGCGGGTCAGTACATCAGGAGGAAGGCCGACGAAGAGTAACTGGAActctaaatacaaataaatctcaACCGTATCAGAAAACAAGGCTTATTGgAAAGACATAAATCATTCCTAGGAAAAtggatggatttattttttctcaacCAACCTTGAGCTCATCTAATGTATGATTTAAAGACATGTTTCCTGTTATGACAATCACCGTCGAAAAGCATTACATGGTCTGGTA
>XR_006251214.1
TTGATCAAGAACTTAGGCTACCAAGTATGTTATTTAGTTATATTCAGACGTATATTCAGACGCATATAGCCCATGTTGCCATTTTCCTTTAACTTGTGTTTTTTGCGGTTGTTAAAGACAATTTAATCATCAGTGACAACTTCTGTGTTACCAGTTCTATCTATTCAGAATGTCAGTGTTTTATCATCTGAATACTGAATACGTTTTTGGACATCTTCGCAAGGTTGCTATTAACAATATAGTCTGGCTGACCTATTTGTTCAGCGTGGAAGTCTATAAGTCTTAAATATTACTCTGCCCTCGCTGTTTTTCATTCTTCTCCAGCTCTGATTATGCTGGTCctcaaaataaatacttgttCTCAAGTTAATTTTACCACTGGGGCCTCGACTGTTCCCAGCTGTCCCTCCTCCCATCCACTCTTGAACTGGTCCCTGACCATACATGGTCTTAGTTGAAGAAAGCGGCAGGCCAAGAGAGCTAGGAAGAAGTGATCTGCCACTCATACAAGCCTGTGTGTGAAAGGGAGGACTCGGTAGCGCTGGCCATGTTACTCCCCCACCGCAGAAATTTACACTGTAATAGTGTAGAGCTAAAAATAGGTACCAGATGTCTGTCTGAGCTGCCACACTTTCTCAGGCAACAGAGGTGAAGCATGGAACGTGTGGAAATTCCCCTCCAGAAATCCACTGACAGCACCGGTCTAGGTTGGACCCAGTGGTGTTCATTATCAGCTTCATTATCAAACTGAAGGGCATCAGATGATGTGTGCAGACTGTCTTACACATGATGCATGTCAAACTAGGACACAATTCCCCAATGTCACTTAGCACTTTAAAGACTACAGAGAAGGAGAGGGGGAAGGTTAGTGCGTCTGCTCTGTGAAATATTGTCATGAATCGCTCCTGACTCTTGACTCCACGGCTCACCTTACAGATGTGGTTTCTGCTGAATTCTAACGGCGGGTCAGTACATCAGGAGGAAGGCCGACGAAGAGTAACTGGAActctaaatacaaataaatctcaACCGTATCAGAAAACAAGGCTTATTGgAAAGACATAAATCATTCCTAGGAAAAtggatggatttattttttctcaacCAACCTTGAGCTCATCTAATGTATGATTTAAAGACATGTTTCCTGTTATGACAATCACCGTCGAAAAGCATTACATGGTCTGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251212.1 False 950 lncRNA 0.41 5 13823672 13835591
XR_006251213.1 False 1118 lncRNA 0.42 6 13823672 13835591
XR_006251214.1 True 1190 lncRNA 0.42 5 13823672 13835591

Neighbor

gene id symbol gene type direction distance location
mrpl47 LOC107659009,LOC107732024,LOC107590634,LOC107709209,LOC107692352,LOC107548661 coding downstream 130846 13691026 ~ 13692826 (-)
nme7 nme7,LOC107659027,LOC107731836,LOC107732015,LOC107692347,LOC107548663 coding downstream 184727 13607516 ~ 13638945 (-)
dpt dpt,LOC107659007,LOC107732012,LOC107590680,LOC107692436 coding downstream 238304 13578792 ~ 13585368 (-)
zbtb11 zbtb11,LOC107731844,LOC107659025,LOC107590644,LOC107732022,LOC107692345,LOC107566487 coding downstream 253750 13562045 ~ 13569922 (-)
dipk1ab fam69a,fam69ab,LOC107590645,LOC107659006,LOC107566484 coding downstream 262647 13543207 ~ 13561025 (-)
lrrc7 lrrc7,LOC107709201,LOC107692363,LOC107739104 coding upstream 150456 13986047 ~ 14040163 (-)
cldn33b LOC107739195,LOC107591162,LOC107659043,LOC107709197,LOC107590677,LOC107692437 coding upstream 290983 14126574 ~ 14128317 (-)
lurap1 lurap1,LOC107709195,LOC107590621,LOC107692438,LOC107591165,LOC107659044 coding upstream 344281 14179872 ~ 14190329 (-)
ttc4 ttc4,LOC107659046,LOC107738930,LOC107709194,LOC107692369 coding upstream 362101 14197692 ~ 14200743 (-)
pde4ba pde4b,pde4ba,LOC107659050,LOC107692372,LOC108443455,LOC107591166,LOC105913193 coding upstream 449906 14285497 ~ 14402960 (-)
G45039 NA non-coding downstream 125961 13697499 ~ 13697711 (-)
G45036 NA non-coding downstream 129508 13693338 ~ 13694164 (-)
G45014 NA non-coding downstream 212079 13536944 ~ 13611593 (-)
G44942 NA non-coding downstream 466151 13356987 ~ 13357521 (-)
G44941 NA non-coding downstream 468889 13354307 ~ 13354783 (-)
G45058 NA non-coding upstream 1714 13837305 ~ 13837538 (-)
G45064 NA non-coding upstream 7143 13842734 ~ 13848641 (-)
G45195 NA non-coding upstream 18306 13853897 ~ 13858117 (-)
G45197 NA non-coding upstream 24659 13860250 ~ 13860818 (-)
G45198 NA non-coding upstream 25644 13861235 ~ 13861445 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other downstream 37769 13718202 ~ 13785903 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 142378 13655260 ~ 13681294 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other downstream 925954 12525756 ~ 12897718 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 2754206 11055035 ~ 11069466 (-)
gng12b LOC107555383,LOC107678346,LOC107705318,LOC107564436,LOC105895117,LOC108271932 other downstream 2838540 10948692 ~ 10985132 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other upstream 324884 14160475 ~ 14193166 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 1491992 15327583 ~ 15330851 (-)
insl5a LOC107692440 other upstream 1653527 15489118 ~ 15490685 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other upstream 1699795 15535386 ~ 15685485 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other upstream 1768319 15603910 ~ 15605470 (-)

Expression


Co-expression Network