LOC122347383 (LOC107711016,LOC107673510)


Basic Information

Item Value
gene id LOC122347383
gene name LOC107711016,LOC107673510
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19606362 ~ 19607056 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251216.1
CACCTATCCCCATTCATGCCAGGATAGCCATGTTGAAGCTGAATTGCAATGCTAGCGTGCAAAACCTGGACTCCACTATTCCCATTCCATCATGGGTGCCACCCCCTCCATCTTACCAAGCCCCCGCGATCCCTCCAAGTTCAGTTATTACAGATCCCTACTCAGCTGGAATGAAGCATGCTTTTCATTCTGGCATCGAGGATCAGTCTGGCTATGATGACTACCTTTAAAACCACCATTCTCTTCATCATCTAGGACTCAGTAACTGTGGGATGTGGTCTACAGAAGCACTTTCACATGAAATATATCTTTAGCAATTTATAGAATTTTCTGCAGAACAACTAtagatttttaaagaatgattaatgataataaagacAATAACAGTGACTCATAACAGTTTGTAAAACAAGATATCAATCCATATAATGCATAACCTCTTCTGCAAACTAATTTCACTTATTCCCGGTTCTCACAAACGAGTCAGTGTATCTATTGTTTTagaatttgaataaattga

Function

NR:

description
PREDICTED: proline-rich protein LAS17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251216.1 True 520 lncRNA 0.39 3 19606362 19607056

Neighbor

gene id symbol gene type direction distance location
sumf1 sumf1,LOC107673603,LOC107585117 coding downstream 38320 19560562 ~ 19568042 (-)
myl6 myl6,zgc:153867,LOC107585121,LOC105013534,LOC108440770,LOC108271738 coding downstream 54505 19547029 ~ 19551857 (-)
pfkmb pfkmb,LOC107673583,LOC107711051,LOC107585122,LOC107582696,LOC107748387,LOC107667407 coding downstream 105277 19486992 ~ 19501085 (-)
itgb7 itgb7,LOC107711053,LOC107673468,LOC107667391,LOC107582697,LOC107740576 coding downstream 119515 19477718 ~ 19486847 (-)
espl1 espl1,LOC107711058,LOC107673592,LOC107740575,LOC107667390 coding downstream 128806 19465314 ~ 19477556 (-)
si:dkey-197j19.5 efcab12 coding upstream 2744 19609800 ~ 19612454 (-)
uroc1 uroc1 coding upstream 6048 19613104 ~ 19619818 (-)
chchd4b LOC107711045,LOC107673517,LOC107580698 coding upstream 13101 19620157 ~ 19621083 (-)
sec61a1 sec61a1,LOC103023094,LOC108440718,LOC103358725,LOC108436273,LOC102228108,LOC107673516,LOC107384934,LOC106518493 coding upstream 15499 19622555 ~ 19627477 (-)
ip6k2b ip6k2b,LOC107585112,LOC107673575,LOC107711042,LOC107748392,LOC107582690,LOC107667389,LOC103024783 coding upstream 26123 19633179 ~ 19637946 (-)
G46540 mettl7a,LOC107711020,LOC107585130,LOC107740572,LOC107667380,LOC107673452,LOC107711000,LOC107582798 non-coding downstream 208632 19393477 ~ 19397730 (-)
G46509 NA non-coding downstream 363551 19212639 ~ 19242811 (-)
LOC122347223 NA non-coding downstream 454668 19149746 ~ 19151694 (-)
G46477 LOC107673579,LOC107711085,LOC107585184,LOC107733604,LOC107685287,LOC107579827 non-coding downstream 557526 19044628 ~ 19048836 (-)
G46476 NA non-coding downstream 562493 19043616 ~ 19043869 (-)
G46658 NA non-coding upstream 184586 19791642 ~ 19792328 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding upstream 194187 19801243 ~ 19802266 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding upstream 227014 19834070 ~ 19838047 (-)
LOC122347207 NA non-coding upstream 270256 19877312 ~ 19880588 (-)
G46803 NA non-coding upstream 361190 19968246 ~ 19968460 (-)
tsfm tsfm,LOC107711018,LOC107585120 other downstream 50420 19553317 ~ 19555942 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other downstream 456631 19115061 ~ 19149731 (-)
G46478 NA other downstream 550231 19055146 ~ 19056131 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other downstream 888874 18714174 ~ 18717488 (-)
LOC122347235 NA other downstream 898766 18706623 ~ 18707596 (-)
tomm6 NA other upstream 234423 19841479 ~ 19842994 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other upstream 235988 19843044 ~ 19847432 (-)
LOC122347177 LOC107584418 other upstream 292616 19899672 ~ 19956730 (-)
mustn1a mustn1a other upstream 391576 19998632 ~ 20000638 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other upstream 488968 20096024 ~ 20102459 (-)

Expression


Co-expression Network