LOC122347411 (efcab12)


Basic Information

Item Value
gene id LOC122347411
gene name efcab12
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15591067 ~ 15592196 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251219.1
AGGGATAAATGTGAGGCAGGCCACACTACAGAaagTCCTGTTGCACCCTGGTGATAAATTTGGAGGTTACTTTGGGACATCCAGAACACACCGAGTTGATGGTAGAGCACATAAGAACCACAAAGAGATGAAGCCTGTTTGCTGGACGGACTCTAATCCTTTCTGGCCTGGAAAGGAAGATCATGTGCGCTTGTTTCTGCCTGTGATGACAAGCTCTCCTGCAACGGTTTTATTTCAGCGTATCAAACATACTGTTGCGCCAAGTCCTGGACACTGGCCTGTAAATCATTTAGGATACTCAACCTCTGGAGACATAGAATCTCGCAAAATCTACAGCCTCTAGACCATCTTTGATCTGTATAGAATGTCtgtattaaattgttgttttgacCTTCTAAAAAGTGATTTTCTACCATTAGATGGCGGCACGCAAACACTGAAATACTACTGTAGGTGCGCTGCTATTTTTAGCTACGCAGTTCTTTGCTTTTTTCGCTCAGCATATTGTCCTCTGTGACAACTAAAGCAGTcatgtttgattttaataaatactaaaatg

Function

symbol description
efcab12 Predicted to enable calcium ion binding activity.

NR:

description
PREDICTED: EF-hand calcium-binding domain-containing protein 12 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251219.1 True 559 lncRNA 0.42 3 15591067 15592196

Neighbor

gene id symbol gene type direction distance location
sgip1a sgip1,LOC107659047 coding downstream 196944 15344929 ~ 15394123 (-)
LOC122346434 pars2,LOC107659014,LOC107590619,LOC107591164,LOC107709182,LOC107738922,LOC107692369 coding downstream 257134 15331236 ~ 15333933 (-)
LOC122346855 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634 coding downstream 334907 15246429 ~ 15256160 (-)
adcyap1r1b adcyap1r1b,LOC107731652,LOC107717143,LOC107692394,LOC107594619 coding downstream 379086 15187162 ~ 15211981 (-)
LOC122346528 LOC107731631,LOC107704508 coding downstream 442982 15144790 ~ 15148085 (-)
LOC122346414 uroc1 coding upstream 2167 15594363 ~ 15600846 (-)
LOC122346598 LOC107673517,LOC107711045,LOC107580698 coding upstream 9236 15601432 ~ 15603448 (-)
LOC122347277 endou coding upstream 99066 15691262 ~ 15695534 (-)
mast2 mast2,LOC107717134,LOC107692432 coding upstream 559950 16152146 ~ 16253840 (-)
tmem69 tmem69,LOC107731626,LOC107684288,LOC107725194,LOC107594642,LOC107692399,LOC107579605 coding upstream 662445 16254641 ~ 16256080 (-)
LOC122347378 NA non-coding downstream 2845 15587506 ~ 15588222 (-)
LOC122347074 NA non-coding downstream 10012 15580584 ~ 15581055 (-)
G45554 NA non-coding downstream 101966 15486663 ~ 15489101 (-)
G45579 NA non-coding downstream 106100 15482906 ~ 15484967 (-)
G45560 NA non-coding downstream 271033 15319385 ~ 15320034 (-)
G45602 NA non-coding upstream 51873 15644069 ~ 15645396 (-)
LOC122347156 NA non-coding upstream 250935 15843131 ~ 15877467 (-)
G45709 NA non-coding upstream 310020 15902216 ~ 16118586 (-)
G45751 NA non-coding upstream 674987 16267183 ~ 16267542 (-)
G45752 NA non-coding upstream 676719 16268915 ~ 16269392 (-)
insl5a LOC107692440 other downstream 100382 15489118 ~ 15490685 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other downstream 260216 15327583 ~ 15330851 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 1397901 14160475 ~ 14193166 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other downstream 1805164 13718202 ~ 13785903 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 1909773 13655260 ~ 13681294 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other upstream 11714 15603910 ~ 15605470 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other upstream 164113 15756309 ~ 15765107 (-)
G45730 pik3r3,LOC107692397,LOC107717145,LOC107675943 other upstream 466772 16058968 ~ 16059767 (-)
G45731 LOC107692397,LOC107556985,LOC107717145,LOC106584012 other upstream 467697 16059893 ~ 16060466 (-)
fam183a fam183a,LOC107551015 other upstream 768971 16361167 ~ 16364020 (-)

Expression


Co-expression Network