LOC122347561


Basic Information

Item Value
gene id LOC122347561
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20239802 ~ 20240436 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251237.1
GAACTATATAAAAGGGGTTGAAGGAGTCTCAGAGGACCAAATGAAACACCAGCATCCATTCTGCTACAGAACAGACAAACTGTGTGAAGATGTGGAGATTAACGTGCGTCACTTTGACCCTTCTCATGTGTGCCAAAGGTTCACTTTCTCAGCTGAATGTTTGTGGACAGGCTCCTCTAAACACTCGTATTGTGGGTGGCGTGGATGCCTCTGAGGGCTCATGGCCGTGG

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0030247 polysaccharide binding molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251237.1 True 230 lncRNA 0.48 3 20239802 20240436

Neighbor

gene id symbol gene type direction distance location
LOC122347299 LOC107683669,LOC107709781,LOC107701556,LOC107709782,LOC107704729,LOC107585716,LOC107739789,LOC107585717,LOC107585718 coding downstream 1142 20237274 ~ 20238660 (-)
slc6a22.1 slc6a13,LOC107584422,LOC107567077,LOC107721195,LOC107712063,LOC108413697 coding downstream 114541 20116875 ~ 20125261 (-)
rab44 NA coding downstream 144285 20084841 ~ 20095517 (-)
trub2 LOC107712105,LOC107673580,LOC107584434,LOC107721199,LOC107569306,LOC107568203,LOC107584444 coding downstream 166305 20070910 ~ 20073497 (-)
hdhd3 hdhd3,LOC107712106,LOC107584439,LOC107673581,LOC107667329 coding downstream 169595 20068870 ~ 20070207 (-)
hemk1 LOC107750260,LOC107712066,LOC107657999,LOC107567089,LOC107584453 coding upstream 183275 20423711 ~ 20431177 (-)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282,LOC107658089,LOC107577493,LOC107673475 coding upstream 542008 20782444 ~ 20786555 (-)
gpr61l LOC107658083,LOC107750281,LOC107749617,LOC107567083,LOC107584511,LOC107673479 coding upstream 554810 20795246 ~ 20799151 (-)
parp3 parp3,LOC107749614,LOC107750280,LOC107658076,LOC107673445 coding upstream 559658 20800094 ~ 20805651 (-)
grm2a grm2a,grm2,LOC107673619,LOC107657935,LOC107567094,LOC107749615,LOC107750271,LOC107584497 coding upstream 566327 20806763 ~ 20841391 (-)
G46842 NA non-coding downstream 65511 20173538 ~ 20174291 (-)
G46838 NA non-coding downstream 87015 20149547 ~ 20152787 (-)
G46836 NA non-coding downstream 109963 20127948 ~ 20129839 (-)
G46816 fkbp5,LOC107584436,LOC107712109,LOC107673486,LOC107721196,LOC107667344 non-coding downstream 124543 20054866 ~ 20115259 (-)
G46803 NA non-coding downstream 271342 19968246 ~ 19968460 (-)
LOC122346791 slc6a11a,LOC107673588,LOC108440580 non-coding upstream 5272 20245708 ~ 20247348 (-)
G46870 NA non-coding upstream 38855 20279291 ~ 20399625 (-)
G46872 NA non-coding upstream 45979 20286415 ~ 20287172 (-)
G46875 NA non-coding upstream 87648 20328084 ~ 20378235 (-)
G46877 NA non-coding upstream 90976 20331412 ~ 20394142 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other downstream 73523 20161440 ~ 20166279 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other downstream 137343 20096024 ~ 20102459 (-)
mustn1a mustn1a other downstream 239164 19998632 ~ 20000638 (-)
LOC122347177 LOC107584418 other downstream 283072 19899672 ~ 19956730 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other downstream 392370 19843044 ~ 19847432 (-)
G46926 NA other upstream 288743 20529179 ~ 20531834 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 1108183 21348619 ~ 21355381 (-)
tardbpb tardbp,LOC107713527,LOC107555974,LOC107666995,LOC107680706,LOC107561006 other upstream 2499536 22739972 ~ 22750947 (-)
G47535 LOC102793276,LOC101471251,LOC100701884,LOC102312415,LOC102199361 other upstream 2881347 23121783 ~ 23163157 (-)
G47590 NA other upstream 3158913 23399349 ~ 23400502 (-)

Expression


Co-expression Network