G26820


Basic Information

Item Value
gene id G26820
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3214890 ~ 3215202 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU30272
TTTTCTGTTTTCCTTTATTTTAGTTAAAGTTTTAAGATGTCTATATAGTTTTTTTTATTTACTATTTTTTTTTTTCTATTGTTAGTTTTAGTACATCAAGTTAAACTAAATGAAAATGAGAAATGTTCCCTTTGCCAGCTAGCTAAAAAGTAACTAAGGTTTTTTTATATTTTATTTTATTTCAGTTAAAGTTTGTTAAAGTCATGAAAATATTTTTTATGGTTTTGGTTTTAGATAACTGTAATAACCCTGTTGCTGAGAAATTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU30272 True 268 lncRNA 0.22 2 3214890 3215202

Neighbor

gene id symbol gene type direction distance location
CI01000004_03204599_03205569 TCEANC2 coding downstream 8822 3204572 ~ 3206068 (-)
CI01000004_03187077_03196194 MRPL37 coding downstream 18692 3187077 ~ 3196198 (-)
CI01000004_03133701_03141953 ACOT11, ACOT11A coding downstream 72911 3133674 ~ 3141979 (-)
CI01000004_03106070_03109051 NA coding downstream 105839 3106042 ~ 3109051 (-)
CI01000004_03070803_03073454 LHX8, LHX8A coding downstream 141409 3070616 ~ 3073481 (-)
CI01000004_03238528_03240932 GFI1AA, GFI1 coding upstream 23156 3238358 ~ 3241491 (-)
CI01000004_03244252_03265862 EVI5 coding upstream 28701 3243903 ~ 3266047 (-)
CI01000004_03277921_03285364 FAM69AA, FAM69A coding upstream 62539 3277741 ~ 3285364 (-)
CI01000004_03433963_03436906 GADD45A, GADD45AA coding upstream 218630 3433832 ~ 3436906 (-)
CI01000004_03475454_03478135 NA coding upstream 259692 3474894 ~ 3479485 (-)
G26754 NA non-coding downstream 35532 3172410 ~ 3179358 (-)
G26744 NA non-coding downstream 82125 3132556 ~ 3132765 (-)
G26752 NA non-coding downstream 92630 3119950 ~ 3122260 (-)
G26751 NA non-coding downstream 97609 3116786 ~ 3117281 (-)
G26714 NA non-coding downstream 146357 3020161 ~ 3068533 (-)
G26788 NA non-coding upstream 52481 3267683 ~ 3275721 (-)
G26810 NA non-coding upstream 85597 3300799 ~ 3306425 (-)
G26812 NA non-coding upstream 115543 3330745 ~ 3332243 (-)
G26811 NA non-coding upstream 127612 3342814 ~ 3355165 (-)
G26803 NA non-coding upstream 130798 3346000 ~ 3351924 (-)
CI01000004_01773383_01774888 INSL5B other downstream 1439949 1772928 ~ 1774942 (-)
G27746 NA other upstream 1963025 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 2405181 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 3319625 6538904 ~ 6541252 (-)
G29388 NA other upstream 3416091 6631293 ~ 6631907 (-)

Expression


Co-expression Network