G26788


Basic Information

Item Value
gene id G26788
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3267683 ~ 3275721 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU30231
TTCTTTCCAAATGATTTATTTGGAAAAGGTGCACACTTTCTTTGGAGCTGTTGACAGTTCGTCTCTTCATTCGTCTTCAGCAGAGTCAGGTGTGACGCCATTCTTAATGAAGCGGGAGAACTGCTTCTTGTACAGGTCCTCATCCTCCTCCATAAGATAGCTCATGTACTCCGAGACGTTCTGCCCCATGATGTGCTTCCTGTGAACCTCCGCATTAAACTCCTTACTTTCAGTGTCGTAGCCTGGGAACCGTTTGACCTGTGAGGGATGGACAGTCCTCCATCCACTGCTCCTTTGAGAGCTCCAAACACCTTATTCCCCGTGCTGGTTCTGGCGAGACCAGCGTCCAGGTAGCATGTAAATGCCCCTGGCTGGCCATCAATGCTTTCCACATTAAATTCGTCACCAGTTACCTCAACCTGGCCTTCGTAGACCTTATCCAGACCAAACTTATTCAGCAGCCTGCGTGCACACAGCAAACCGGTGCAGTAGGCGGCAGCGTAGTTTGTCAGTCCAACGGTAACGCCATACTTTGGCAACTCGTGAGAGTAAGCAGCGCAGACGATCGCGTCGCCTTCAATTTTGGCATATGCGATCTGGCAAACAATATCCCTGTTGGAGAGTCGAACGATCATCCTGTACTTCGGTGTGTTGTACTTGTTCTTGTCTTGGATGACAAGGCGTTTGCGGGCAAAGTAGTCAGTTTTTCCCTCTCTCCTCCTCCTGAACTTGACCTGGTATCTCTTGAAATACGCCTTGTTCTTAACCACCTTAACGAAGCCCATTTTGTAATCGTTTGTTCTCCTTTAGGTTGGGAGACTGAAGTCTTCAGACTCCGATACTGCTCCCGCTGC
>TU30224
TTCTTTCCAAATGATTTATTTGGAAAAGGTGCACACTTTCTTTGGAGCTGTTGACAGTTCGTCTCTTCATTCGTCTTCAGCAGCCTCCTGAGCCCGGAGGAAGCTGGCCTTTTTCTGGGCCACGCGGTCCTTCCTCTGGGCCAGAGTGAGCTTGGCGCGATTCCACCTACAACACAATATCCATCAGTGATGAGAAAAGAAACATCTCATCTGCTCATAATAGTGTAGTAGATGGTATTAGAGATAATATAGCTAATAAAAAAATAACAGGAAATATAAACATCTAACATGCAACTCTGTTATAAGTAGCAACTACAGTATATTTGCATCATCTTAATCATCACAATTGAGATCCTAAGGCAAAACTCAACCCTTTATCTCAACAATAAACATTTGTATAGCAACATGTCAAGCTGCAATGAACATTTATACAGATTTTGATGAACAATGAAGTCAATACTGTCACTGTAACTTTATGGCAACATTAATTTTATCCTAAGAGCAGCCCTATGAAAAAAAACAGAGGAAATAAAGCGTGTGGACGCACCTCTTCTTCTTGACCTCTTTCTTGGGCTTCTTCTCATGTACCGGGTTCTCACGAATGGAAGCATGAGCCTTTTTGTACATCTCTTCAACCTGCAGGAAAGAGTCAGGTGTGACGCCATTCTTAATGAAGCGGGAGAACTGCTTCTTGTACAGGTCCTCATCCTCCTCCATAAGATAGCTCATGTACTCCGAGACGTTCTGCCCCATGATGTGCTTCCTGTGAACCTCCGCATTAAACTCCTTACTTTCAGTGTCGTAGCCTGGGAACCGTTTGACCTGTGAGGGATGGACAGTCCTCCATCCACTGCTCCTTTGAGAGCTCCAAACACCTTATTCCCCGTGCTGGTTCTGGCGAGACCAGCGTCCAGGTAGCATGTAAATGCCCCTGGCTGGCCATCAATGCTTTCCACATTAAATTCGTCACCAGTTACCTCAACCTGGCCTTCGTAGACCTTATCCAGACCAAACTTATTCAGCAGCTATAAGCAGAAAACAAAT
>TU30227
TCAATTCAAATCCAAAAGCAAACAAGTTAGCAGTAAAGTGATCCAGCAAAGTGCTTTCTTACAGAGTCAGGTGTGACGCCATTCTTAATGAAGCGGGAGAACTGCTTCTTGTACAGGTCCTCATCCTCCTCCATAAGATAGCTCATGTACTCCGAGACGTTCTGCCCCATGATGTGCTTCCTGTGAACCTCCGCATTAAACTCCTTACTTTCAGTGTCGTAGCCTGGGAACCGTTTAGTGCTGAGGGATGGACAGTCCTCCATCCACTGCTCCTTTGAGAGCTCCAAACACCTTATTCCCCGTGCTGGTTCTGGCGAGACCAGCGTCCAGGTAGCATGTAAATGCCCCTGGCTGGCCATCAATGCTTTCCACATTAAATTCGTCACCAGTTACCTCAACCTGGCCTTCGTAGACCTTATCCAGACCAAACTTATTCAGCAGCTATAAGCAGAAAACAAAT
>TU30225
TTCTTTCCAAATGATTTATTTGGAAAAGGTGCACACTTTCTTTGGAGCTGTTGACAGTTCGTCTCTTCATTCGTCTTCAGCAGCCTCCTGAGCCCGGAGGAAGCTGGCCTTTTTCTGGGCCACGCGGTCCTTCCTCTGGGCCAGAGTGAGCTTGGCGCGATTCCACCTCTTCTTGACCTCTTTCTTGGGCTTCTTCTCATGTACCGGGTTCTCACGAATGGAAGCATGAGCCTTTTTGTACATCTCTTCAACCTGCAGGAAAGAGTCAGGTGTGACGCCATTCTTAATGAAGCGGGAGAACTGCTTCTTGTACAGGTCCTCATCCTCCTCCATAAGATAGCTCATGTACTCCGAGACGTTCTGCCCCATGATGTGCTTCCTGTGAACCTCCGCATTAAACTCCTTACTTTCAGTGTCGTAGCCTGGGAACCGTTTAGTGCTGAGAAAGAAAATTATATTGTCAATATTCCCATCAATAAAGATGGGACATACAACTTCACAGCA

Function

NR:

description
PREDICTED: mitochondrial glutamate carrier 1-like isoform X2

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU30231 False 854 lncRNA 0.49 7 3267683 3275721
TU30224 False 1044 lncRNA 0.35 3 3271100 3275721
TU30227 False 460 lncRNA 0.48 2 3271100 3274737
TU30225 True 504 TUCP 0.48 3 3274433 3275721

Neighbor

gene id symbol gene type direction distance location
CI01000004_03244252_03265862 EVI5 coding downstream 1636 3243903 ~ 3266047 (-)
CI01000004_03238528_03240932 GFI1AA, GFI1 coding downstream 26192 3238358 ~ 3241491 (-)
CI01000004_03214098_03222707 GLMNA, GLMN coding downstream 44976 3214098 ~ 3222707 (-)
CI01000004_03204599_03205569 TCEANC2 coding downstream 61615 3204572 ~ 3206068 (-)
CI01000004_03187077_03196194 MRPL37 coding downstream 71485 3187077 ~ 3196198 (-)
CI01000004_03277921_03285364 FAM69AA, FAM69A coding upstream 2020 3277741 ~ 3285364 (-)
CI01000004_03433963_03436906 GADD45A, GADD45AA coding upstream 158111 3433832 ~ 3436906 (-)
CI01000004_03475454_03478135 NA coding upstream 199173 3474894 ~ 3479485 (-)
CI01000004_03505898_03508656 NSUN4 coding upstream 230077 3505798 ~ 3508770 (-)
CI01000004_03514180_03525227 PIF1 coding upstream 237952 3513673 ~ 3525582 (-)
G26820 NA non-coding downstream 52481 3214890 ~ 3215202 (-)
G26754 NA non-coding downstream 88325 3172410 ~ 3179358 (-)
G26744 NA non-coding downstream 134918 3132556 ~ 3132765 (-)
G26752 NA non-coding downstream 145423 3119950 ~ 3122260 (-)
G26751 NA non-coding downstream 150402 3116786 ~ 3117281 (-)
G26810 NA non-coding upstream 25078 3300799 ~ 3306425 (-)
G26812 NA non-coding upstream 55024 3330745 ~ 3332243 (-)
G26811 NA non-coding upstream 67093 3342814 ~ 3355165 (-)
G26803 NA non-coding upstream 70279 3346000 ~ 3351924 (-)
G26837 NA non-coding upstream 79494 3355215 ~ 3355472 (-)
CI01000004_01773383_01774888 INSL5B other downstream 1492742 1772928 ~ 1774942 (-)
G27746 NA other upstream 1902506 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 2344662 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 3259106 6538904 ~ 6541252 (-)
G29388 NA other upstream 3355572 6631293 ~ 6631907 (-)
G29656 NA other upstream 4688643 7964364 ~ 7965500 (-)

Expression


Co-expression Network