trnaa-ugc_115


Basic Information

Item Value
gene id trnaa-ugc_115
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13467494 ~ 13467565 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_1262
ggggatgtagctcagtggtagagcgcatgctttgcatgtatgaggtcctgggttcaatccccagcatctcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1262 True 72 tRNA 0.54 1 13467494 13467565

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc_114 NA coding downstream 268 13467155 ~ 13467226 (-)
trnaa-cgc_54 NA coding downstream 437 13466986 ~ 13467057 (-)
trnaa-cgc_53 NA coding downstream 629 13466794 ~ 13466865 (-)
trnaa-cgc_52 NA coding downstream 968 13466455 ~ 13466526 (-)
trnaa-ugc_113 NA coding downstream 1116 13466307 ~ 13466378 (-)
trnaa-cgc_55 NA coding upstream 303 13467868 ~ 13467939 (-)
glmnb glmnb,LOC107659021,LOC107692340,LOC107590673,LOC107731827 coding upstream 4331 13471896 ~ 13478911 (-)
gfi1ab gfi1,gfi1ab,LOC107659005,LOC107590681,LOC107692343,LOC107566482 coding upstream 22385 13489950 ~ 13495596 (-)
evi5b evi5,LOC107590647,LOC107692341,LOC107566483 coding upstream 28570 13496135 ~ 13535440 (-)
dipk1ab fam69a,fam69ab,LOC107590645,LOC107659006,LOC107566484 coding upstream 75642 13543207 ~ 13561025 (-)
G44942 NA non-coding downstream 109973 13356987 ~ 13357521 (-)
G44941 NA non-coding downstream 112711 13354307 ~ 13354783 (-)
G44940 NA non-coding downstream 113314 13353915 ~ 13354180 (-)
G44939 NA non-coding downstream 113844 13353364 ~ 13353650 (-)
G44938 NA non-coding downstream 114425 13352462 ~ 13353069 (-)
G45014 NA non-coding upstream 69379 13536944 ~ 13611593 (-)
G45036 NA non-coding upstream 225773 13693338 ~ 13694164 (-)
G45039 NA non-coding upstream 229934 13697499 ~ 13697711 (-)
LOC122347350 NA non-coding upstream 356107 13823672 ~ 13835591 (-)
G45058 NA non-coding upstream 369740 13837305 ~ 13837538 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other downstream 569776 12525756 ~ 12897718 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 2398028 11055035 ~ 11069466 (-)
gng12b LOC107555383,LOC107678346,LOC107705318,LOC107564436,LOC105895117,LOC108271932 other downstream 2482362 10948692 ~ 10985132 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other downstream 2631969 10578989 ~ 10835525 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other upstream 187695 13655260 ~ 13681294 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other upstream 250637 13718202 ~ 13785903 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other upstream 692910 14160475 ~ 14193166 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 1860018 15327583 ~ 15330851 (-)
insl5a LOC107692440 other upstream 2021553 15489118 ~ 15490685 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnaa-ugc-311 NA coding NW_023494159.1 JAAXML020000487.1 25609 ~ 25680 (-)
striped catfish (Pangasianodon hypophthalmus) trnaa-ugc_7 NA coding NC_047606.1 CM018552.1 9107686 ~ 9107757 (+)
mexican tetra (Astyanax mexicanus) trnaa-ugc_22 NA coding NW_019172608.1 APWO02002206.1 221592 ~ 221663 (-)
mexican tetra (Astyanax mexicanus) trnaa-ugc_7 NA coding NW_019172608.1 APWO02002206.1 196298 ~ 196369 (-)