LOC122348397 (zgc:92429,LOC107588137,LOC107753943,LOC107668941,LOC103044742,LOC108434854,LOC108267498)


Basic Information

Item Value
gene id LOC122348397
gene name zgc:92429,LOC107588137,LOC107753943,LOC107668941,LOC103044742,LOC108434854,LOC108267498
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 819637 ~ 829670 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU72435
aatttttgaaaatatcactttaaaacattttaaataactgtgtGTTATATTTGAAAAGGTAATTTATTCATACGATTgggaagctgaattttcagcatcattacttccaGTCTTTAGAGTCACACAATCATTTCTAAAATCGTTCTAGTGTGCTGATTCATGTTGTgctatttgatatttaatttctttttcaggattctctgaATTTGTAATCGCAAACATCTTACCTCCAACTTTTTACTGGCAGATTTTcagcattaaaattaatttgttaataaacGGAACCGTCTAAACTCTCATACTGTGTTTATTCTGCCAAACCACGGTAATGAAGTGCAACAGAACAAACAGCAATggccacactttatttttgcGTCAACAGCAACAATCCTGAAGTAGATGATTGCAGTCAGACAAGAGTCCAAGGCCATGGAAGCTTGACTGCAACCCATATggcaaaatactttaaataaaaaggataaATAATACAGCTTAAAAGTAAACAGTAGTCTTGACGATGAAGAGGATCAGTACCTGTTTTGGTTCTTTTTCTCTgttcaaagaaaaaattaaaaaatacattttcataaaatcaTTGCCTTCCTCCCGTACCTGATGACCACAGTCATAACCGATGTGCTGATACGCAGAGATGCTGAAAGTAACGTCAATCCAAACTAAACGGCACGCAGCAACAATTCATCACAGATGAGAAAGTTtgaaacaaacacatgcaaaatgataagaaaaaaatacagtccAACTTTTGAGGGGCAAAAATCAGCACCTAGACTGTCCATAAACGTTCATATCGAGACCGTATTCGCAATTATCTTTTGGTTTTTACAGAGCAATACTGTTAGACTTTGGCTCACAACGATCAAGAAAACAATTAAGGTGTCCAGTATTGTGTATGTTATTTCTTTCAATGGAGAAATGTTACACTGTACCCTCTGTTGATAAATACTGTTTGTGATCCACACATCAGGCGAGTTCAAGTTTTGCTTTCCCTCAGGGCTACCACGTACAGACTGACCCCGAAAAGGGCCGACGGTTGAATAACATTCAGAAATTGGATTATATACTGTCTTATATGTAACACATCTCATCGCAGGTTTCCCGTGAACGAGATACCAGTTTTCATATGATGAAACAAAATGCACAACCTTTTaagttagctttttttaaacatttgttttctatattaaagTGCAAGGCGAGATAAAATACATCTTGAAATGTACGACATACAGCATCACTTTCTTTCACGAGATTTCcctgcagaaaaaaagtaaagaaacagCTCACTTTAAACCACTGCGCTTCATTTACTCACTTGGCACAAGAGATACGGCACTGAAGCTTCTAGAACGACGGCTCAATTGACACACTAGTGATACACCATCACGACTTGGCTGACGATCCgagagtaaaaagaaaaagtagacctttttttttctgcataagGGCATGAAAGGCATGCAGAAACTAGACGGTCTTCGATAGAGCGATACAGAGACTAGATGCAGGTTAACTATTCAGCCAGTTTGTCGAATAATACAGGTCCACCATACATTCATTTATCAggatattccttttttttttttttttgcacgtgtGTTTAACTGTcttcattttaatacagttgTTTTATATGATTTAGTTTGTTCCTTTCTTGTTGTTCAGGTGGCGGGCCGAAGAAATGTCtcgttttttttccactttggaAAAGAAGAAGATTTTGAGAGAAAGTTTGTGTCTGACGGCTTGAATActaagaaacaaagaaaaagtagCAAGATCGTAAAATAAGTTACGGATTAGGTCGTGCACGGGAAACGGAGAGGGATGACAGACAATTTCCTGCTCTCTGGTGACGAGCATTTCCCGTGACGGCGTCCGCTGGTGCAGAAGAAACACAACAGAAGCTCAGTAATGCAGTGCCGGGCCGCGTGGGACATGTGTCTCCTGTCCTCCCTCACTGGCTGGAAAGCAGCGTCCCGTGGGGGTCCTGACAAACCACCCACAAGCTTTTCAGTTGCCTGCAGGATCCACATCACACATCCCGCCCTTGATATCCCAAGATCCTGAGCGGTGCAAACAAAAGTCTTCATACTGCTTTTCCCGGGCACACGGGACGGGTCCTGGAATTAAACCAACAACAGGAAGAcaagaagaaagagaatgaaATGCAGTCTAATAATCTGGAATCTGTTAATGCATGTGATGCATGTTCTTTTTGTCACATGATTAGCTTCATGCTATGTTGCAGAGTGATTCAAGATTAAATGCAACATTATAAACACTGactcagaaataataaaaaaagaatttgaatGATACGATATGACGATGCCGTATGACAATTTATAGACTACCATACAAAGATTAAAACcgttttttaattgaaatgaatatattaataaaacaaaagtatttatttaaaatacttatttaaccaagatgcattaaattgatcaaaagttacTGTACaggcattaaaatattacaaaagatttatattttatatttatttttaacttttgttaatcaaaaaaaa
>XM_043243797.1
atatgtagaaattaaatatgctgtatattaaaaaaaaaaagctttagtaTAGTTTTGGTGTATTGTGTGGCATTTGTTGTTGGATTAATGATTCAGCTGTGTCCCCTGCCCCCTCTGTAGACCCCAGGAATGTCACACTTTCAGACAGACCCCAACAGCTGtaaggagggagagagagagagcacatggcactgGCTATTTTTAGTTCATTCAGACTAGAACatctctccttctttctctgGACGTGGCTGTTCCTTCTGGATCTCTCCTCGGCTGAAAGTTCTGGATAAGTTTCACAGCGGCTGCACGAGTTCATAAGTACCCGAGACGAGCACAGGACAGAGCGTATAAagaaggaaaagagtccagcgATAAAGTCAACCTAAATACCTAACAGGCCAACATGGCTCTACTGTGTTACAACAGAGGCTGCGGGGATCGATTTGACGCCGACAAAAACTCAGATGATGCCTGCCAGTTTCACCCCGGAGTGCCAATCTTCCACGACGCCTTAAAGGGCTGGTCCTGCTGTAAAAAGAGGACGACAGATTTCTCGGAGTTCCTGTCAATCAAGGGTTGCACTCGCGGGCGCCATAGTAACGAGAAGCCCGAGGAGCCTCTGCGGCCAGAGGTGACGTCTGACAAGGGAGACGTGAAGCGCCACAGTGGAGGGGAAATTATCTACCAGGGACCCAAATCTGCAGAAGCCCTGGAAAAAGAGAGACCCAGCTCAGACGAGCCAAAGACAAAGCTGCAGGTGAAGATCGCTCCCTCTCTGGCTCAGATCGCTGAGAAAATGGAGATCACTGagagggagaagagagagaagctgGAGAGTCAAGTCATGGTGGTTGGGGTGAAGTGCAAGAATGCGGGATGCAAAACAATCTACCAGGGTCCCCAGACAGATGCAGAGATGTGCAGATATCATCCCGGGGTGCCCGTCTTCCACGAAGGATATAAATACTGGAACTGCTGCTGCATAAAAACCACTGACTTCAACGCCTTCCTGGATCAGAAGGGCTGCACCACTGGAAAACACTGCTGGATCGCCAAACAGGACAAAAAGAAGGTGGCTTGCAGGCATGATTGGCACCAGACAGGAAAGCAGGTCGTGGTCACGATCTACGCCAAGAACTCCAGTCCAGAGCATTCCTACGTGGAGGCGAACCGCACAGTGTTAACATGCCACATTCAGTTTGAGGGGGACAAAGTGTTTCATAAGGACATCCACTTATGGGGGGTGATTGACGTGAAGAGCAGTTTTGTGAACATGGTGCCCTCTAAAGTTGAAGTGACCATGCGGAAGGCTGATGCTGTAGCCTGGGGGAAGCTTGAAGACCCCAAACACAAACCTGAGCCAGAGGTCACCGACCAGATGAACACCGAACAGGAAGACGTCAAACCCGACTGGTACATCTCAGATGATGACATCAGTGAGTCCGACTGGGAAGACGAAGAGGAGGACCAGAAAGAGAGTgaggagaaaaaagaagaaaaacaggcAGACGATGGACCCCCTGAGCTAGAAGAGCCTGCTGCTGTCCCCCcagaaaaatgaacattttattctgaGCTTATGGATTTGTTTACAAGATCACATGGGATTTATGCAAACATGGGACTGCTGCTTTCAAGtagttggctttttttttttttttaagtttctctcactgtttttctgctaaaatatattttactacattttattgtgtgctTAAAGGTTAGAGAAGTCTTAAAACTTGTCATCCAGTTTTGCACACCGTCACaggaatttttgaaaatatcactttaaaacattttaaataactgtgtGTTATATTTGAAAAGGTAATTTATTCATACGATTgggaagctgaattttcagcatcattacttccaGTCTTTAGAGTCACACAATCATTTCTAAAATCGTTCTAGTGTGCTGATTCATGTTGTgctatttgatatttaatttctttttcaggattctctgaATTTGTAATCGCAAACATCTTACCTCCAACTTTTTACTGGCAGATTTTcagcattaaaattaatttgttaataaacGGAACCGTCTAAACTCTCATACTGTGTTTATTCTGCCAAACCACGGTAATGAAGTGCAACAGAACAAACAGCAATggccacactttatttttgcGTCAACAGCAACAATCCTGAAGTAGATGATTGCAGTCAGACAAGAGTCCAAGGCCATGGAAGCTTGACTGCAACCCATATggcaaaatactttaaataaaaaggataaATAATACAGCTTAAAAGTAAACAGTAGTCTTGACGATGAAGAGGATCAGTACCTGTTTTGGTTCTTTTTCTCTgttcaaagaaaaaattaaaaaatacattttcataaaatcaTTGCCTTCCTCCCGTACCTGATGACCACAGTCATAACCGATGTGCTGATACGCAGAGATGCTGAAAGTAACGTCAATCCAAACTAAACGGCACGCAGCAACAATTCATCACAGATGAGAAAGTTtgaaacaaacacatgcaaaatgataagaaaaaaatacagtccAACTTTTGAGGGGCAAAAATCAGCACCTAGACTGTCCATAAACGTTCATATCGAGACCGTATTCGCAATTATCTTTTGGTTTTTACAGAGCAATACTGTTAGACTTTGGCTCACAACGATCAAGAAAACAATTAAGGTGTCCAGTATTGTGTATGTTATTTCTTTCAATGGAGAAATGTTACACTGTACCCTCTGTTGATAAATACTGTTTGTGATCCACACATCAGGCGAGTTCAAGTTTTGCTTTCCCTCAGGGCTACCACGTACAGACTGACCCCGAAAAGGGCCGACGGTTGAATAACATTCAGAAATTGGATTATATACTGTCTTATATGTAACACATCTCATCGCAGGTTTCCCGTGAACGAGATACCAGTTTTCATATGATGAAACAAAATGCACAACCTTTTaagttagctttttttaaacatttgttttctatattaaagTGCAAGGCGAGATAAAATACATCTTGAAATGTACGACATACAGCATCACTTTCTTTCACGAGATTTCcctgcagaaaaaaagtaaagaaacagCTCACTTTAAACCACTGCGCTTCATTTACTCACTTGGCACAAGAGATACGGCACTGAAGCTTCTAGAACGACGGCTCAATTGACACACTAGTGATACACCATCACGACTTGGCTGACGATCCgagagtaaaaagaaaaagtagacctttttttttctgcataagGGCATGAAAGGCATGCAGAAACTAGACGGTCTTCGATAGAGCGATACAGAGACTAGATGCAGGTTAACTATTCAGCCAGTTTGTCGAATAATACAGGTCCACCATACATTCATTTATCAggatattccttttttttttttttttgcacgtgtGTTTAACTGTcttcattttaatacagttgTTTTATATGATTTAGTTTGTTCCTTTCTTGTTGTTCAGGTGGCGGGCCGAAGAAATGTCtcgttttttttccactttggaAAAGAAGAAGATTTTGAGAGAAAGTTTGTGTCTGACGGCTTGAATActaagaaacaaagaaaaagtagCAAGATCGTAAAATAAGT

Function

symbol description
zgc:92429 Predicted to enable zinc ion binding activity. Predicted to be involved in centrosome duplication. Is expressed in adaxial cell; cardiovascular system; musculature system; and somite. Orthologous to human ITGB1BP2 (integrin subunit beta 1 binding protein 2).

NR:

description
PREDICTED: cysteine and histidine-rich domain-containing protein 1-like

GO: NA

KEGG:

id description
K13458 RAR1; disease resistance protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU72435 False 2560 lncRNA 0.37 2 819637 822438
XM_043243797.1 True 3586 mRNA 0.42 11 820625 829670

Neighbor

gene id symbol gene type direction distance location
si:dkey-172j4.3 si:dkey-172j4.3,LOC107753941,LOC107742290,LOC107562901,LOC107588135,LOC107668950,LOC107691954 coding downstream 103425 663675 ~ 716212 (-)
gpr185b gpr185b,LOC107669001,LOC107562838,LOC107588216,LOC107742332,LOC107691958,LOC108267436 coding downstream 266243 546103 ~ 553394 (-)
si:dkey-171c9.3 LOC107692004,LOC107742319 coding downstream 452242 362023 ~ 367395 (-)
tnfsf10l LOC107691962,LOC107562848,LOC107742295,LOC107701536,LOC107753950,LOC108410411,LOC103041464 coding downstream 461305 339825 ~ 358332 (-)
tifa tifab,LOC107742334,LOC107692005,LOC107659708,LOC107753989,LOC107588127 coding downstream 534637 283333 ~ 285000 (-)
si:ch211-200p22.4 si:ch211-200p22.4,LOC107562624,LOC107742289,LOC107691953,LOC107668925,LOC107588138 coding upstream 243 829913 ~ 879559 (-)
vbp1 vbp1,LOC107588140,LOC107562614,LOC107668907,LOC107742288,LOC107691952 coding upstream 65415 895085 ~ 897679 (-)
si:dkey-183c6.8 zmp:0000000799,LOC107742283,LOC107691946,LOC107562569,LOC107668868,LOC107588144,LOC107753935 coding upstream 97742 927412 ~ 943125 (-)
cideb cideb,LOC107742331,LOC107691999,LOC107588145,LOC107562587,LOC107753985,LOC107669275 coding upstream 128800 958470 ~ 961382 (-)
dhrs4 dhrs4,LOC107742330,LOC107563424,LOC107753983,LOC107669257,LOC107588148,LOC103023174 coding upstream 138451 968121 ~ 970747 (-)
G48926 NA non-coding downstream 7088 811996 ~ 812549 (-)
LOC122348399 NA non-coding downstream 185575 630786 ~ 634062 (-)
G48895 NA non-coding downstream 240148 536102 ~ 579489 (-)
G48825 NA non-coding downstream 483052 309044 ~ 336585 (-)
G48817 rbm4.3,LOC107742300,LOC107562822 non-coding downstream 511312 287255 ~ 308325 (-)
G48936 syt4,LOC107562593,LOC107742284,LOC107691948,LOC107588142,LOC107668880,LOC107753936 non-coding upstream 69473 899143 ~ 903900 (-)
G48985 NA non-coding upstream 116794 946464 ~ 947162 (-)
G49004 NA non-coding upstream 152669 982339 ~ 982762 (-)
G49011 NA non-coding upstream 166414 996084 ~ 996499 (-)
G49023 NA non-coding upstream 249293 1078963 ~ 1079192 (-)
G48823 LOC107667730 other downstream 545139 270369 ~ 274498 (-)
si:dkey-112a7.4 si:dkey-112a7.4 other downstream 605952 211341 ~ 213685 (-)
zgc:162171 zgc:162171,LOC107588217,LOC107753986,LOC107742285,LOC107691949,LOC107668889,LOC103045050 other upstream 50916 880586 ~ 888958 (-)
zgc:153151 NA other upstream 211252 1040922 ~ 1046317 (-)
G49133 LOC107691997,LOC107741482,LOC107563408,LOC107668708,LOC107588219 other upstream 340311 1169981 ~ 1220893 (-)
G49309 LOC107658783,LOC107708003 other upstream 1068413 1898083 ~ 1898826 (-)
LOC122348471 pwp1,LOC107658969,LOC105905702 other upstream 1071920 1901590 ~ 1907162 (-)

Expression


Co-expression Network