G49309 (LOC107658783,LOC107708003)


Basic Information

Item Value
gene id G49309
gene name LOC107658783,LOC107708003
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 1898083 ~ 1898826 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU73047
AGAAAGCATGGCGTCGGGTCACATCGGCAGGCTGGCTAGCCTGTTTATTCGTGTTAACACCagcaaaaatatacaatttagaGCCGGAACTTTTCTGTCGTCTTGCAACAAATCTACTATCAGAGGTGCATCCTTGAACGATAACAATGATGTGGAAATCGCAGTGACATCTGATGGAAACACAATAGTGTGTTATCATCCGACAGAAGACGTACCCTATGAGCTCACACAGcCGATTGTCAGGCCAGACGCTATCAGTGATCATGCAGAAACCCATGAGCAGGTGCTCAAAGCCAGACTCGGTAAAGacgtttt

Function

NR:

description
PREDICTED: 39S ribosomal protein L42, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73047 True 315 TUCP 0.46 4 1898083 1898826

Neighbor

gene id symbol gene type direction distance location
LOC122349772 nudt4b,LOC107555891,LOC107662198,LOC107708005,LOC107576967,LOC101067274,LOC103028168,LOC108275142,LOC108438514 coding downstream 7312 1883030 ~ 1890771 (-)
badb LOC107749804,LOC107750664,LOC107691899,LOC107562077,LOC107588192,LOC107669205 coding downstream 383504 1512152 ~ 1514579 (-)
LOC122349649 majin coding downstream 388173 1506202 ~ 1509910 (-)
gpha2 gpha2,LOC107749831,LOC107588222,LOC107668374 coding downstream 394046 1501239 ~ 1504037 (-)
arl2 arl2,LOC107588185,LOC107668402,LOC107749806 coding downstream 422711 1473357 ~ 1475372 (-)
LOC122348468 LOC107707987,LOC107555888,LOC107707097,LOC107662203,LOC107658968,LOC107590514 coding upstream 8647 1907473 ~ 1921042 (-)
LOC122349140 NA coding upstream 112042 2010868 ~ 2017348 (-)
LOC122348911 LOC107707953,LOC107707085 coding upstream 121434 2020260 ~ 2036466 (-)
LOC122349155 tars,LOC107755726,LOC107680583,LOC107700064,LOC107727452,LOC108255896 coding upstream 297172 2195998 ~ 2207100 (-)
gas1a gas1a,LOC107680573,LOC107755728,LOC107557610,LOC107727450,LOC107558025,LOC107700065 coding upstream 446058 2344884 ~ 2346782 (-)
G49243 NA non-coding downstream 195414 1701393 ~ 1702669 (-)
G49241 NA non-coding downstream 198447 1699306 ~ 1699636 (-)
G49239 NA non-coding downstream 199321 1698449 ~ 1698762 (-)
G49231 NA non-coding downstream 291000 1606871 ~ 1607083 (-)
G49210 NA non-coding downstream 380675 1497323 ~ 1517408 (-)
G49322 LOC107590516,LOC107658754,LOC107662226,LOC105896753 non-coding upstream 46935 1945761 ~ 2009919 (-)
G49332 NA non-coding upstream 133301 2032127 ~ 2034171 (-)
G49340 NA non-coding upstream 158357 2057183 ~ 2058617 (-)
G49351 NA non-coding upstream 229617 2128443 ~ 2128870 (-)
LOC122349156 NA non-coding upstream 294183 2193009 ~ 2195812 (-)
G49133 LOC107691997,LOC107741482,LOC107563408,LOC107668708,LOC107588219 other downstream 677190 1169981 ~ 1220893 (-)
zgc:153151 NA other downstream 851766 1040922 ~ 1046317 (-)
zgc:162171 zgc:162171,LOC107588217,LOC107753986,LOC107742285,LOC107691949,LOC107668889,LOC103045050 other downstream 1009125 880586 ~ 888958 (-)
LOC122348397 zgc:92429,LOC107588137,LOC107753943,LOC107668941,LOC103044742,LOC108434854,LOC108267498 other downstream 1068413 819637 ~ 829670 (-)
G48823 LOC107667730 other downstream 1623585 270369 ~ 274498 (-)
LOC122348471 pwp1,LOC107658969,LOC105905702 other upstream 2764 1901590 ~ 1907162 (-)
chst10 chst10 other upstream 1539923 3438749 ~ 3465586 (-)
LOC122348141 NA other upstream 2367442 4266268 ~ 4268884 (-)
trnar-ucu_8 NA other upstream 2385583 4284409 ~ 4284499 (-)
LOC122349098 NA other upstream 2454235 4353061 ~ 4360979 (-)

Expression


Co-expression Network