LOC122348471 (pwp1,LOC107658969,LOC105905702)


Basic Information

Item Value
gene id LOC122348471
gene name pwp1,LOC107658969,LOC105905702
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 1901590 ~ 1907162 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU73048
GACCCTCAAGAAACACACAGATAAGGTTCAGACGCTGAAGTTTCACCCGTTTGAGGCTCAAACTCTCATCAGCGGATCATATGACAAGTCTGCGATCCTGTACGACTGCCGCAGTCCAGACGACAGCCATCGGATCTGGCGCTTTAGTGGACAGGTGGAGCGCCTCGTTTGGGATCACTTCACTCCGTGTCACTTCCTGGCGAGTACAGAGGACGGCTTCATTTATTGTCTGGATGCTCGTTCGGATAAACCTGTGTTTACACTCAGAGCTCACGATGGAGAAGTTTCAGGGATGGATCTGAGCAGTCAGGTCCGCGGCTGTCTGGTGACGTCTTCAGCGGATAAACACGTGAAGGTCTGGGACATCATGGGAGACAAACCCAGCCTGATCCACTCCAGAGACATGAAGATGgGTGTTTTGTTCTGCGGCTCCTGTTGTCCAGATCTGCCGTTCGTCTATGCGTTTGGAGGACAGAAGGACGGGCTGCGCGTCTGGGACATTAGTGACGTCGCTGCAGTCGCTGAGGCTTTTGGCAGCCGGGAACGTTTGGTGGCGAATACAGTATCCGGAGCATCGAGCGGTGTCATGGATGTCTCGTAAAACACCGGCATAACCTGAGGCTAAATCATTGACACACAGAAGACCAGAAGAAGAATGGAGCAGTGCTTCGGAGTGAATAACATGAACAGCGTCTGTCAATGTGCAGAACAGATTTATCTTCTGAAAAGATATCAGAACTTTGCTGTCTTTGACAAATGTTTGAAGCCGCTTTCCTTTGAGGGAATCTTAAGGATGATTGAAATTTCTCTCCATATTCttcatatttcttcttcttAGGAAGTGTATAAATAATTATGGTAATTTCCAATATAAAACTATGGAATCTAAGACATTCGTCTTATTCTGTATTTCAAAATTTTCTGtcactgtttaaaaacaaattgcttTAATGCTTTCTCAAATGGTTATTGAATAAAGCGATCTCTATTGTGGGGATTCGCTGCCCTCCAGTGGCGTATTACGGTACTGCTgg
>TU73049
gtatatatataattaattaattttgcagGTTCAGACGCTGAAGTTTCACCCGTTTGAGGCTCAAACTCTCATCAGCGGATCATATGACAAGTCTGCGATCCTGTACGACTGCCGCAGTCCAGACGACAGCCATCGGATCTGGCGCTTTAGTGGACAGGTGGAGCGCCTCGTTTGGGATCACTTCACTCCGTGTCACTTCCTGGCGAGTACAGAGGACGGCTTCATTTATTGTCTGGATGCTCGTTCGGATAAACCTGTGTTTACACTCAGAGCTCACGATGGAGAAGTTTCAGGGATGGATCTGAGCAGTCAGGTCCGCGGCTGTCTGGTGACGTCTTCAGCGGATAAACACGTGAAGGTCTGGGACATCATGGGAGACAAACCCAGCCTGATCCACTCCAGAGACATGAAGATGgGTGTTTTGTTCTGCGGCTCCTGTTGTCCAGATCTGCCGTTCGTCTATGCGTTTGGAGGACAGAAGGACGGGCTGCGCGTCTGGGACATTAGTGACGTCGCTGCAGTCGCTGAGGCTTTTGGCAGCCGGGAACGTTTGGTGGCGAATACAGTATCCGGAGCATCGAGCGGTGTCATGGATGTCTCGTAAAACACCGGCATAACCTGAGGCTAAATCATTGACACACAGAAGACCAGAAGAAGAATGGAGCAGTGCTTCGGAGTGAATAACATGAACAGCGTCTGTCAATGTGCAGAACAGATTTATCTTCTGAAAAGATATCAGAACTTTGCTGTCTTTGACAAATGTTTGAAGCCGCTTTCCTTTGAGGGAATCTTAAGGATGATTGAAATTTCTCTCCATATTCttcatatttcttcttcttAGGAAGTGTATAAATAATTATGGTAATTTCCAATATAAAACTATGGAATCTAAGACATTCGTCTTATTCTGTATTTCAAAATTTTCTGtcactgtttaaaaacaaattgcttTAATGCTTTCTCAAATGGTTATTGAATAAAGCGATCTCTATTGTGGGGATTCGCTGCCCTCCAGTGGCGTATTACGGTACTGCTgg
>TU73050
gtatatatataattaattaattttgcagGTTCAGACGCTGAAGTTTCACCCGTTTGAGGCTCAAACTCTCATCAGCGGATCATATGACAAGTAGGTCATGATGTAGAAATGGCtcgaccaatcagagcgcagCACAGCTgagcctgaccaatcagagcgctgTGTGTCACAGGTCTGCGATCCTGTACGACTGCCGCAGTCCAGACGACAGCCATCGGATCTGGCGCTTTAGTGGACAGGTGGAGCGCCTCGTTTGGGATCACTTCACTCCGTGTCACTTCCTGGCGAGTACAGAGGACGGCTTCATTTATTGTCTGGATGCTCGTTCGGATAAACCTGTGTTTACACTCAGAGCTCACGATGGAGAAGTTTCAGGGATGGATCTGAGCAGTCAGGTCCGCGGCTGTCTGGTGACGTCTTCAGCGGATAAACACGTGAAGGTCTGGGACATCATGGGAGACAAACCCAGCCTGATCCACTCCAGAGACATGAAGATGgGTGTTTTGTTCTGCGGCTCCTGTTGTCCAGATCTGCCGTTCGTCTATGCGTTTGGAGGACAGAAGGACGGGCTGCGCGTCTGGGACATTAGTGACGTCGCTGCAGTCGCTGAGGCTTTTGGCAGCCGGGAACGTTTGGTGGCGAATACAGTATCCGGAGCATCGAGCGGTGTCATGGATGTCTCGTAAAACACCGGCATAACCTGAGGCTAAATCATTGACACACAGAAGACCAGAAGAAGAATGGAGCAGTGCTTCGGAGTGAATAACATGAACAGCGTCTGTCAATGTGCAGAACAGATTTATCTTCTGAAAAGATATCAGAACTTTGCTGTCTTTGACAAATGTTTGAAGCCGCTTTCCTTTGAGGGAATCTTAAGGATGATTGAAATTTCTCTCCATATTCttcatatttcttcttcttAGGAAGTGTATAAATAATTATGGTAATTTCCAATATAAAACTATGGAATCTAAGACATTCGTCTTATTCTGTATTTCAAAATTTTCTGtcactgtttaaaaacaaattgcttTAATGCTTTCTCAAATGGTTATTGAATAAAGCGATCTCTATTGTGGGGATTCGCTGCCCTCCAGTGGCGTATTACGGTACTGCTgg
>XM_043243928.1
tgccTCGGCGCATGTGTGACGTCATCGGGGCGCGTCGCAGTGCCGTTTGCTTCTCGGGCAGTCCTCGTGTGTTGTTTTGTCGtcctaaatatatactaataaacCATGAGTTCTCAAATAACGTGTGTCGGATGGGTGAAGCACGGAGTCGCTAAAGAAACACCGGATAAAGTTGAGTTGAACAAAGAGGAGCTACAACGTATCATATCGGAGGCTAAAGAGGAGCTAGGTGATCCCGGtggtgaggaggaggaggaggttgATGAAGGTGTGGTCAGTGGTCTAGATGTCAGTGAAGAGGCATCAGCTGTTCCGTCTGCTACTGAAGAAAtaaaagaggaagaggatgagcTTGCAGAGTACGGGCTGGAAAACTATGATGAAGAAGACATCGctacGTCAAATCTTGGAGACAGTCTGGCGGGACTGACAGTGTTTGGCACCAATGAAGAGGATCCATACATCACCATCAAAGACACCGACCAGTACGAGCGGGAGGATTTTCAGATTAAATCCACAGATAACCTGATTCTAGCTGGACGGGCTGAGAAAGACTGCTGTAACCTGGAGGTTTACGTGTTTAACTCCCAGGAAGACTCTCTGTATGTGCATCATGACATCCTGCTCCCTGCGTATCCGCTCTGTGTGGAGTGGCTGAACTTTGACCCCAATCCAGAGGAAGGACAAGGGAATTACGCGTCGGTGGGGAACATGACGCCGGTGATAGATGTCTGGGATCTGGATGTGGTGGACTGTTTGGAGCCGGCCTTCTCACTCGGcagcaaaaagaagaagaaaaataagaagCGCGGCCGGTCCGTCATGGCTTTTCGGGACGGACACACGGATGCTGTGCTGGATCTGTCCTGGAACAGACTGGTCAGCGCTGAGTGTGATGAAGCGCCTGCGGATGAGTCGGTGATCCTGTGGGATATGGAGAAGGAAAACCAGCAGCGGCTGAAGACCCTCAAGAAACACACAGATAAGGTTCAGACGCTGAAGTTTCACCCGTTTGAGGCTCAAACTCTCATCAGCGGATCATATGACAAGTCTGCGATCCTGTACGACTGCCGCAGTCCAGACGACAGCCATCGGATCTGGCGCTTTAGTGGACAGGTGGAGCGCCTCGTTTGGGATCACTTCACTCCGTGTCACTTCCTGGCGAGTACAGAGGACGGCTTCATTTATTGTCTGGATGCTCGTTCGGATAAACCTGTGTTTACACTCAGAGCTCACGATGGAGAAGTTTCAGGGATGGATCTGAGCAGTCAGGTCCGCGGCTGTCTGGTGACGTCTTCAGCGGATAAACACGTGAAGGTCTGGGACATCATGGGAGACAAACCCAGCCTGATCCACTCCAGAGACATGAAGATGgGTGTTTTGTTCTGCGGCTCCTGTTGTCCAGATCTGCCGTTCGTCTATGCGTTTGGAGGACAGAAGGACGGGCTGCGCGTCTGGGACATTAGTGACGTCGCTGCAGTCGCTGAGGCTTTTGGCAGCCGGGAACGTTTGGTGGCGAATACAGTATCCGGAGCATCGAGCGGTGTCATGGATGTCTCGTAAAACACCGGCATAACCTGAGGCTAAATCATTGACACACAGAAGACCAGAAGAAGAATGGAGCAGTGCTTCGGAGTGAATAACATGAACAGCGTCTGTCAATGTGCAGAACAGATTTATCTTCTGAAAAGATATCAGAACTTTGCTGTCTTTGACAAATGTTTGAAGCCGCTTTCCTTTGAGGGAATCTTAAGGATGATTGAAATTTCTCTCCATATTCttcatatttcttcttcttAGGAAGTGTATAAATAATTATGGTAATTTCCAATATAAAACTATGGAATCTAAGACATTCGTCTTATTCTGTATTTCAAAATTTTCTGtcactgtttaaaaacaaattgcttTAATGCTTTCTCAAATGGTTATTGAATAAAGCGATCTCTATTGTGGGGATTCGCTGCCCTCCAGTGGCGTATTACGGTACTGCTggcttttaaggttttttttttttttttcttgaagttttatttcagatttttttaatgataaataattggCTACGtcattttatccaaaaaaaaatatttttatgcattttattttttcataataaataaagcgATCTCTGTTTCATTGCCCTCCAGGGTCGTATTGCGGTACGCTTATTTTCCCGTAAATTTTAATTCTTCACGATTTGCCCTTTTTGAATTAAAACGATCTCAATGTGGCGGTGTTCCGCTGCCCTCCAGTGGCGTATTGTGGTACTGCTGGCGTTGATCcgttgatacattttttttgctccGTTAAAATCCTCTCTTTTGTAAATGTTAGTAAAATATGCTTGAggattgtattttattgtaatgattacattttattttatccctGATTTTATTTGAcccttttgaataaaatgatttcgATCGCGGTGTTCCGCTGCCCTCCAGTGGCGTATTACGGTA

Function

symbol description
pwp1 Predicted to be active in nucleus. Orthologous to human PWP1 (PWP1 homolog, endonuclein).

NR:

description
PREDICTED: periodic tryptophan protein 1 homolog

GO: NA

KEGG:

id description
K14791 PWP1; periodic tryptophan protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU73048 False 1034 TUCP 0.47 7 1902062 1904331
TU73049 False 1037 TUCP 0.46 6 1902062 1904143
TU73050 False 1119 TUCP 0.46 5 1902062 1904143
XM_043243928.1 True 2468 mRNA 0.46 17 1901590 1907162

Neighbor

gene id symbol gene type direction distance location
LOC122349772 nudt4b,LOC107555891,LOC107662198,LOC107708005,LOC107576967,LOC101067274,LOC103028168,LOC108275142,LOC108438514 coding downstream 10819 1883030 ~ 1890771 (-)
badb LOC107749804,LOC107750664,LOC107691899,LOC107562077,LOC107588192,LOC107669205 coding downstream 387011 1512152 ~ 1514579 (-)
LOC122349649 majin coding downstream 391680 1506202 ~ 1509910 (-)
gpha2 gpha2,LOC107749831,LOC107588222,LOC107668374 coding downstream 397553 1501239 ~ 1504037 (-)
arl2 arl2,LOC107588185,LOC107668402,LOC107749806 coding downstream 426218 1473357 ~ 1475372 (-)
LOC122348468 LOC107707987,LOC107555888,LOC107707097,LOC107662203,LOC107658968,LOC107590514 coding upstream 311 1907473 ~ 1921042 (-)
LOC122349140 NA coding upstream 103706 2010868 ~ 2017348 (-)
LOC122348911 LOC107707953,LOC107707085 coding upstream 113098 2020260 ~ 2036466 (-)
LOC122349155 tars,LOC107755726,LOC107680583,LOC107700064,LOC107727452,LOC108255896 coding upstream 288836 2195998 ~ 2207100 (-)
gas1a gas1a,LOC107680573,LOC107755728,LOC107557610,LOC107727450,LOC107558025,LOC107700065 coding upstream 437722 2344884 ~ 2346782 (-)
G49243 NA non-coding downstream 198921 1701393 ~ 1702669 (-)
G49241 NA non-coding downstream 201954 1699306 ~ 1699636 (-)
G49239 NA non-coding downstream 202828 1698449 ~ 1698762 (-)
G49231 NA non-coding downstream 294507 1606871 ~ 1607083 (-)
G49210 NA non-coding downstream 384182 1497323 ~ 1517408 (-)
G49322 LOC107590516,LOC107658754,LOC107662226,LOC105896753 non-coding upstream 38599 1945761 ~ 2009919 (-)
G49332 NA non-coding upstream 124965 2032127 ~ 2034171 (-)
G49340 NA non-coding upstream 150021 2057183 ~ 2058617 (-)
G49351 NA non-coding upstream 221281 2128443 ~ 2128870 (-)
LOC122349156 NA non-coding upstream 285847 2193009 ~ 2195812 (-)
G49309 LOC107658783,LOC107708003 other downstream 2764 1898083 ~ 1898826 (-)
G49133 LOC107691997,LOC107741482,LOC107563408,LOC107668708,LOC107588219 other downstream 680697 1169981 ~ 1220893 (-)
zgc:153151 NA other downstream 855273 1040922 ~ 1046317 (-)
zgc:162171 zgc:162171,LOC107588217,LOC107753986,LOC107742285,LOC107691949,LOC107668889,LOC103045050 other downstream 1012632 880586 ~ 888958 (-)
LOC122348397 zgc:92429,LOC107588137,LOC107753943,LOC107668941,LOC103044742,LOC108434854,LOC108267498 other downstream 1071920 819637 ~ 829670 (-)
chst10 chst10 other upstream 1531587 3438749 ~ 3465586 (-)
LOC122348141 NA other upstream 2359106 4266268 ~ 4268884 (-)
trnar-ucu_8 NA other upstream 2377247 4284409 ~ 4284499 (-)
LOC122349098 NA other upstream 2445899 4353061 ~ 4360979 (-)
G50107 NA other upstream 2625884 4533046 ~ 4574002 (-)

Expression


Co-expression Network