G49424


Basic Information

Item Value
gene id G49424
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 2366393 ~ 2466286 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU73230
GAAGAAGGGAGAGAAAAgatatatgcatttttgcatcaAACGTGACTATAACGATCCTAAAAGTAGGCTTAATGTTCTTTACGTGATgaaatttctttttcttgcttttcaGCCTAGGGTGGAATATGAGCTGGATATTTCCAGTTTTCGTGAGATTCACCCTTTAACTGTTTACGTCAGAGACGCATGGATTTGGTTCCCATCAAAAAGGAGGGTCCCCTCAGGTTTTATCACAAGCAACAGGTATTTCCTGAGGGAACATGGGCCATTATCAC

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0006936 muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
TU73230 True 275 lncRNA 0.40 2 2366393 2466286

Neighbor

gene id symbol gene type direction distance location
gas1a gas1a,LOC107680573,LOC107755728,LOC107557610,LOC107727450,LOC107558025,LOC107700065 coding downstream 19611 2344884 ~ 2346782 (-)
LOC122349155 tars,LOC107755726,LOC107680583,LOC107700064,LOC107727452,LOC108255896 coding downstream 159293 2195998 ~ 2207100 (-)
LOC122348911 LOC107707953,LOC107707085 coding downstream 329927 2020260 ~ 2036466 (-)
LOC122349140 NA coding downstream 349045 2010868 ~ 2017348 (-)
LOC122348468 LOC107707987,LOC107555888,LOC107707097,LOC107662203,LOC107658968,LOC107590514 coding downstream 445351 1907473 ~ 1921042 (-)
fbp2 LOC107557612,LOC107755732,LOC107680540,LOC107727448,LOC107700070,LOC107558028 coding upstream 32652 2498938 ~ 2504580 (-)
fbp1a fbp1a,f16p1,LOC107557613,LOC107700071,LOC108426201,LOC103033769,LOC107727435 coding upstream 39283 2505569 ~ 2510033 (-)
npffr2a npffr2a,LOC107697256,LOC107755724,LOC107719191,LOC107574064,LOC107700061,LOC103039748 coding upstream 318082 2784368 ~ 2798162 (-)
slc4a4a slc4a4,LOC107755741,LOC107700079,LOC107747688,LOC107685251 coding upstream 365540 2831826 ~ 2881239 (-)
ifngr2 NA coding upstream 418973 2885259 ~ 2888147 (-)
G49423 NA non-coding downstream 1303 2364807 ~ 2365090 (-)
G49422 NA non-coding downstream 19194 2346855 ~ 2347199 (-)
G49403 NA non-coding downstream 50822 2308081 ~ 2315571 (-)
LOC122349156 NA non-coding downstream 170581 2193009 ~ 2195812 (-)
G49351 NA non-coding downstream 237523 2128443 ~ 2128870 (-)
G49444 NA non-coding upstream 18258 2484544 ~ 2485199 (-)
G49447 dapk1,LOC107680553,LOC107755715,LOC107557602,LOC107700066,LOC107558027 non-coding upstream 22724 2489010 ~ 2491915 (-)
G49440 ctsla,LOC107755730,LOC107680563,LOC107557611,LOC107558029,LOC107727441 non-coding upstream 27729 2494015 ~ 2497899 (-)
G49450 NA non-coding upstream 45270 2511556 ~ 2522869 (-)
G49453 NA non-coding upstream 66936 2533222 ~ 2533643 (-)
LOC122348471 pwp1,LOC107658969,LOC105905702 other downstream 459231 1901590 ~ 1907162 (-)
G49309 LOC107658783,LOC107708003 other downstream 467567 1898083 ~ 1898826 (-)
G49133 LOC107691997,LOC107741482,LOC107563408,LOC107668708,LOC107588219 other downstream 1145500 1169981 ~ 1220893 (-)
zgc:153151 NA other downstream 1320076 1040922 ~ 1046317 (-)
zgc:162171 zgc:162171,LOC107588217,LOC107753986,LOC107742285,LOC107691949,LOC107668889,LOC103045050 other downstream 1477435 880586 ~ 888958 (-)
chst10 chst10 other upstream 972463 3438749 ~ 3465586 (-)
LOC122348141 NA other upstream 1799982 4266268 ~ 4268884 (-)
trnar-ucu_8 NA other upstream 1818123 4284409 ~ 4284499 (-)
LOC122349098 NA other upstream 1886775 4353061 ~ 4360979 (-)
G50107 NA other upstream 2066760 4533046 ~ 4574002 (-)

Expression


Co-expression Network