Gene
RNA
| Item | Value |
|---|---|
| gene id | G26983 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 3956744 ~ 3956954 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU30456 | True | 211 | lncRNA | 0.45 | 1 | 3956744 | 3956954 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_03802203_03806124 | NA | coding | downstream | 149573 | 3801136 ~ 3807171 (-) |
| CI01000004_03737431_03794978 | PTPRFB, PTPRF | coding | downstream | 161294 | 3737370 ~ 3795450 (-) |
| CI01000004_03705008_03734116 | NA | coding | downstream | 221250 | 3704143 ~ 3735494 (-) |
| CI01000004_03681226_03695729 | KDM4AB, KDM4A | coding | downstream | 260191 | 3681108 ~ 3696553 (-) |
| CI01000004_03612407_03645686 | ST3GAL3B | coding | downstream | 309280 | 3611978 ~ 3647464 (-) |
| CI01000004_04062573_04103207 | NA | coding | upstream | 104243 | 4061197 ~ 4103361 (-) |
| CI01000004_04177460_04183900 | PBX1A, PBX1B, PBX1 | coding | upstream | 220506 | 4177460 ~ 4183993 (-) |
| CI01000004_04241031_04243866 | PBX1A | coding | upstream | 283288 | 4240242 ~ 4244611 (-) |
| CI01000004_04267237_04294023 | NA | coding | upstream | 309772 | 4266726 ~ 4294110 (-) |
| CI01000004_04361874_04362518 | NA | coding | upstream | 404707 | 4361661 ~ 4362716 (-) |
| G26902 | NA | non-coding | downstream | 26795 | 3819183 ~ 3929949 (-) |
| G26889 | NA | non-coding | downstream | 49288 | 3884365 ~ 3907456 (-) |
| G26955 | NA | non-coding | downstream | 283589 | 3672939 ~ 3673155 (-) |
| G26948 | NA | non-coding | downstream | 298875 | 3657554 ~ 3657869 (-) |
| G26924 | NA | non-coding | downstream | 408049 | 3548474 ~ 3548695 (-) |
| G26992 | NA | non-coding | upstream | 21652 | 3978606 ~ 3978816 (-) |
| G26995 | NA | non-coding | upstream | 31289 | 3988243 ~ 3988560 (-) |
| G27425 | NA | non-coding | upstream | 142266 | 4099220 ~ 4099538 (-) |
| G27456 | NA | non-coding | upstream | 197198 | 4154152 ~ 4154379 (-) |
| G26788 | NA | other | downstream | 681023 | 3267683 ~ 3275721 (-) |
| CI01000004_01773383_01774888 | INSL5B | other | downstream | 2181803 | 1772928 ~ 1774942 (-) |
| G27746 | NA | other | upstream | 1221273 | 5178227 ~ 5203724 (-) |
| CI01000004_05617072_05627369 | NA | other | upstream | 1663429 | 5616644 ~ 5628289 (-) |
| CI01000004_06539836_06541252 | NA | other | upstream | 2577873 | 6538904 ~ 6541252 (-) |
| G29388 | NA | other | upstream | 2674339 | 6631293 ~ 6631907 (-) |
| G29656 | NA | other | upstream | 4007410 | 7964364 ~ 7965500 (-) |
