G27615


Basic Information

Item Value
gene id G27615
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 4773738 ~ 4775594 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU31188
GGTCTGGCTCGAGTTGGATGGCTCTGTCATAGCAGGCAGTAGATTCACGCAGAAGTCCAATGCTCTCGTGCTCCAGGATCTGCTCTCTCAATGAAGGCTCCTCTTTCCTCAGATCATTTACACCCCTCACACCATCTGGCTCGTGCATGGCTGCATACATAGTCTGTAGGAATGAAAGATGGTCCTGAATGTTCTGTTTCTTCTCACGGATGAAGGACTCAAAATGCATGACAGCCCGTGTGTAGGCTCTGGAGCGAAAGGATGCCTTGGCCAGCACATCCTGAGGAATGCTGTTGAGGAAGGCTACTACGCTTTGATATTCACTGCTCTCTGGGCCTGTTGCCTGTGTCTGCGGCTGCTCTCTGGCATGTTTTCCTGATCTCTTGTTGGTACTCAGGCTGTGTAATTTGTGGCGGGACCACTGAGTGAGATGGTCCAGCATGGAGAAGACCGTTTGTGTGCTGAGCTGACTCAAACTGGAGGCGTTGTCCTGCAGTCGCAATAACCGTGGGTCACCCTCCTTCAGGACTGCCATGATCTCTTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU31188 True 545 lncRNA 0.41 3 4773738 4775594

Neighbor

gene id symbol gene type direction distance location
CI01000004_04748921_04753787 NA coding downstream 19951 4748778 ~ 4753787 (-)
CI01000004_04739743_04747596 AGFG1B coding downstream 26142 4739743 ~ 4747596 (-)
CI01000004_04733237_04737401 NA coding downstream 36337 4732691 ~ 4737401 (-)
CI01000004_04730906_04732177 NA coding downstream 41561 4730730 ~ 4732177 (-)
CI01000004_04712970_04717937 GRK7, GRK7A coding downstream 55067 4712287 ~ 4718671 (-)
CI01000004_04894515_04904347 SH3GLB1B coding upstream 118892 4894486 ~ 4905121 (-)
CI01000004_04906112_04907528 NA coding upstream 129650 4905244 ~ 4907528 (-)
CI01000004_04909539_04912655 NA coding upstream 133945 4909539 ~ 4912713 (-)
CI01000004_04980768_04988531 NA coding upstream 204958 4980552 ~ 4989538 (-)
CI01000004_05001695_05020719 NTNG1 coding upstream 226023 5001617 ~ 5020807 (-)
G27603 NA non-coding downstream 48633 4724532 ~ 4725105 (-)
G27599 NA non-coding downstream 53495 4719681 ~ 4720243 (-)
G27598 NA non-coding downstream 54642 4718829 ~ 4719096 (-)
G27579 NA non-coding downstream 88993 4684544 ~ 4684745 (-)
G27642 NA non-coding upstream 30104 4805698 ~ 4807541 (-)
G27672 NA non-coding upstream 116106 4891700 ~ 4892225 (-)
G27685 NA non-coding upstream 186337 4961931 ~ 4964228 (-)
G27740 NA non-coding upstream 368975 5144569 ~ 5153318 (-)
G27755 NA non-coding upstream 431162 5206756 ~ 5208585 (-)
G26788 NA other downstream 1498017 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 2998797 1772928 ~ 1774942 (-)
G27746 NA other upstream 402633 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 844789 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 1759233 6538904 ~ 6541252 (-)
G29388 NA other upstream 1855699 6631293 ~ 6631907 (-)
G29656 NA other upstream 3188770 7964364 ~ 7965500 (-)

Expression


Co-expression Network