G27672


Basic Information

Item Value
gene id G27672
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 4891700 ~ 4892225 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU31253
CAAAAAAAACCCTCACATTTCAGTAACTATTTTAGTATATCTTCTCAAGGGACAATACTATAGAAATGAAACTTGTATATATTTTACAGTAGTCAATGTGCTGCTTGTATAGCAGTATAGATTTACTGTCCACTGAAAATAACTTAACATACAGCCATTATTGTCTAAATAGCTGGCAACAAAAGGGAGTACACCCTAAGTGATAACAGCTCTACATCTTTTAACCATGCAAAGCCACATGTCCTATTCATCATGTTCATGTTTTTGTCTGCTTGATAGGACAATAAAAATTTGTGTATCTTGTATTAGAGCAGTTAAAATTTGGTGCTTTGAGTACAATTCTCTCATACTGATCACTGGATGTTCAACATGGCACCTCATGGCAAAAAACTCTCTGAGGATTTGAGAATTAGAAATGTTGCTCTCCACAAAGATGGCCTAGGCTATAAGAAGATCGATAACATCATGAAACTGAGTTACAGTACAGTGGCCAGGGTCATAGAGAGGTTTTCCAAGACGGGTTCCA

Function

NR:

description
PREDICTED: zinc finger protein 609 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31253 True 526 lncRNA 0.43 1 4891700 4892225

Neighbor

gene id symbol gene type direction distance location
CI01000004_04748921_04753787 NA coding downstream 137913 4748778 ~ 4753787 (-)
CI01000004_04739743_04747596 AGFG1B coding downstream 144104 4739743 ~ 4747596 (-)
CI01000004_04733237_04737401 NA coding downstream 154299 4732691 ~ 4737401 (-)
CI01000004_04730906_04732177 NA coding downstream 159523 4730730 ~ 4732177 (-)
CI01000004_04712970_04717937 GRK7, GRK7A coding downstream 173029 4712287 ~ 4718671 (-)
CI01000004_04894515_04904347 SH3GLB1B coding upstream 2261 4894486 ~ 4905121 (-)
CI01000004_04906112_04907528 NA coding upstream 13019 4905244 ~ 4907528 (-)
CI01000004_04909539_04912655 NA coding upstream 17314 4909539 ~ 4912713 (-)
CI01000004_04980768_04988531 NA coding upstream 88327 4980552 ~ 4989538 (-)
CI01000004_05001695_05020719 NTNG1 coding upstream 109392 5001617 ~ 5020807 (-)
G27642 NA non-coding downstream 84159 4805698 ~ 4807541 (-)
G27615 NA non-coding downstream 116106 4773738 ~ 4775594 (-)
G27603 NA non-coding downstream 166595 4724532 ~ 4725105 (-)
G27599 NA non-coding downstream 171457 4719681 ~ 4720243 (-)
G27598 NA non-coding downstream 172604 4718829 ~ 4719096 (-)
G27685 NA non-coding upstream 69706 4961931 ~ 4964228 (-)
G27740 NA non-coding upstream 252344 5144569 ~ 5153318 (-)
G27755 NA non-coding upstream 314531 5206756 ~ 5208585 (-)
G27859 NA non-coding upstream 348121 5240346 ~ 5245574 (-)
G27873 NA non-coding upstream 361449 5253674 ~ 5253923 (-)
G26788 NA other downstream 1615979 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 3116759 1772928 ~ 1774942 (-)
G27746 NA other upstream 286002 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 728158 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 1642602 6538904 ~ 6541252 (-)
G29388 NA other upstream 1739068 6631293 ~ 6631907 (-)
G29656 NA other upstream 3072139 7964364 ~ 7965500 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G323650 NA non-coding NC_047615.1 CM018561.1 21053322 ~ 21063269 (+)
mexican tetra (Astyanax mexicanus) G279367 NA non-coding NW_019172408.1 APWO02002006.1 205809 ~ 225836 (-)