G27685


Basic Information

Item Value
gene id G27685
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 4961931 ~ 4964228 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU31270
GGGTATAAAATATTTTAATAAAAGTAATACAAAATAGTTTCATGGCCATTCAGAATTTAAAATCTAGTAAATTTTCTCGCACCATCAGCGAGTGTGGCAAAAAGTTACATTTGGACCCTGTATACAGCTATAGAGAATTCACTGGCTAAACGGTGTGAAACAAGTCATAATTTACATGCATTCTGATGAAAACCAGACAACATGAACTGTTAGGTGCATTAAGAAACAGATGTATGATTGCAATTATCTTTTCAACATCTACGACAGCAGTGAAAATGACATTTCTGTAAATATAGTTTTCTGAGAAAAGACTTGACCTGGATTTTAGCATATAAAACAGCTTGTAAAAAAAATGTCTGTCCATTTAGAGAACAATTTCCCTTGCACAGAACTTACAAAAATGTTTTAAACAAAAGTTCATCTGTGATGCCAGTCCTCAGAGAAACCTTGTTTTTGTCTGTTTTCCAGTAAAAAAATCTAAACATCCTTAAAACAAGATAAACTTACCTCAGAAGACAAATGACACAATATAAGACCTTTTCAGAGAAAGTACTTTGGATATACACAACTGTTCAAAAGTTTGGGGTGAGTAAGATTTTTTGTTTTTAAAAGAAGTTTCTTATGCTCAACAAGTCTGCATTTATTTGATCACAAATATGGAAGTTTCGGCGTAGGTTCTACCAGGAAGACTCTAATGCCACGTCATTCATTGTTAAAAAATTAGATCTAGCCAATCACAGCACGACACCTTATATAAAAATTCAATCTTACTCTTTCATTGATGAATAGAAAGCTTAAAGGAATTGTTCTAAGTAGAAATTTTTTTAAATTACAAATGTCTTTACTGTCACTTGCATCCTTTCTGAATAAAAGGTATTATTTATGTATTATATAAAAGTAAACCTTACTAACCCCAAACTTTAAAAAAGGTAGTGCATTTTGTCCTCTTCCATTGGCAGTATTTTTATTTCATACTTCCATTTTTTGCAGTGTCTAGCCTCAGTCCCTATTGCAAACACTGTTATGTTAACTAGTCTTTCCGTTGCATGAAAAGAGAAGGAATTGACTCAAGTCCAAAATCAGTGCCAACATTCTGCTTGGGAGCACCTGAGGTTCAGAAACAGACAGAGCGATGACTGATCACAGCGCAGTGCGTCAGGCCGGCTGAGATGGATATCGCACTGAACGGCAGGCCTCCTGTCACCGCGCAGCGCCCCGAGCGCACTGAGAGAGCACTGCTGCTAAGTGTTATCAGGGCTGAAGAGGAGAAGGCAGGGAGGAAGGCTTCGTGACAGCATCTCGCCCCAGCCAAACTTTGCAGAGTCAGACGGGTGGATGAAATCATCAATTATAGCACAAGGTGAGCTGAAAGCACCGCGTAAAGGTCGCCGAGTGGAGGGAAAAAAACGGCCAGCTCAGGGCTTTTCTCTCTGCGTGCCACTCCTGAGTTTATGGGAGGTCCGGCATAGCACAGAAATGGAGTTTAAATTTTAAACAGGCAGAGAGAGGGGGGCCCCAGGCCCTGTGTGAAGATTTCAGGAGGTGACAGGGTGAGAGGGAGGGAAAGAGTGAGAGAAAAAGACTGAATGTGGAGCAGCGAGGGACGTTCATAACTAATTAAACAGTCAAAGCTGACGGGGCCTCAGATGCATCACGCTGCAGGTCTCAACCACAGTCCACCGGATCCCATTAGATGAGGTTGATAATTGCTGTGCATTGTTCACTATTACAATTCTTGTCCAACGCCAACAGGTGGCTTATCACTGTCACAGCATAGTGAGGATGACTTCCTGTGCTGGTCACTCCTCTTCCTCCACATAGGTTGAAGGGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31270 True 1833 lncRNA 0.41 2 4961931 4964228

Neighbor

gene id symbol gene type direction distance location
CI01000004_04909539_04912655 NA coding downstream 49218 4909539 ~ 4912713 (-)
CI01000004_04906112_04907528 NA coding downstream 54403 4905244 ~ 4907528 (-)
CI01000004_04894515_04904347 SH3GLB1B coding downstream 56810 4894486 ~ 4905121 (-)
CI01000004_04748921_04753787 NA coding downstream 208144 4748778 ~ 4753787 (-)
CI01000004_04739743_04747596 AGFG1B coding downstream 214335 4739743 ~ 4747596 (-)
CI01000004_04980768_04988531 NA coding upstream 16324 4980552 ~ 4989538 (-)
CI01000004_05001695_05020719 NTNG1 coding upstream 37389 5001617 ~ 5020807 (-)
CI01000004_05073667_05096493 NA coding upstream 108690 5072918 ~ 5097284 (-)
CI01000004_05113181_05116553 AMY2A coding upstream 148934 5113162 ~ 5116578 (-)
CI01000004_05232776_05234535 NA coding upstream 268201 5232429 ~ 5235527 (-)
G27672 NA non-coding downstream 69706 4891700 ~ 4892225 (-)
G27642 NA non-coding downstream 154390 4805698 ~ 4807541 (-)
G27615 NA non-coding downstream 186337 4773738 ~ 4775594 (-)
G27603 NA non-coding downstream 236826 4724532 ~ 4725105 (-)
G27599 NA non-coding downstream 241688 4719681 ~ 4720243 (-)
G27740 NA non-coding upstream 180341 5144569 ~ 5153318 (-)
G27755 NA non-coding upstream 242528 5206756 ~ 5208585 (-)
G27859 NA non-coding upstream 276118 5240346 ~ 5245574 (-)
G27873 NA non-coding upstream 289446 5253674 ~ 5253923 (-)
G27890 NA non-coding upstream 333283 5297511 ~ 5297995 (-)
G26788 NA other downstream 1686210 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 3186990 1772928 ~ 1774942 (-)
G27746 NA other upstream 213999 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 656155 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 1570599 6538904 ~ 6541252 (-)
G29388 NA other upstream 1667065 6631293 ~ 6631907 (-)
G29656 NA other upstream 3000136 7964364 ~ 7965500 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G33478 NA non-coding NC_048565.1 CM023219.2 32342865 ~ 32345335 (+)
mexican tetra (Astyanax mexicanus) G28263 igf2r non-coding NC_035899.1 CM008302.1 54857710 ~ 54859047 (-)