G27740


Basic Information

Item Value
gene id G27740
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5144569 ~ 5153318 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU31335
GATTTCTTCTGAAACTGACATTATACTACTCGAAGAAAAGCTTCAAATACAAATAAAGAGTCAACTTGCTTTCCATCTGCGAGGTTGATTGCACGGAAAAGGGGGTAATCCTCAGGAGCGGGTTTCCCATGCTGATCCTCATACAGGAAGATCGGTGAGCGGCCCACCTCCACACCCAGCTGCTGGATGCCCTGCTCGTTGTATACCGACAAAAGGAAGGACTGTATTCCTGCCTTTGGCTTGATAGTCATAAGGATGGAGAAATCCTGAGGGAATACTCCTCCTGGGAAGAGCTGCTTGGTTGGGGAGCTGAGTTGAGCTCGTTTGTCCACTCGGTAGGCCACATCTGGTTTAGATCCTCTCCGGATGGTGCAGAAGCCTTGTGTTTTCTTCACTCCTTCAGGTGAACTTTTAAAGTCTAAGACCTTGAGCACATCCACGGGTTCAGCTGCTCTCACATGTGTTGCCTGTAGGACAAAAGTCAGACTGAAGATTGCACTTAAAGCGGAGTTCCTGAGCCACTTTTTCGTTTTCCATCTCGTGGACCACCTTTCCTTATCCATGACCGGCACCCTCAACTGTGAGTTATTTTCAAATGCGTTCCTTTTCCACAATCCAGATTATTGTTATTTATTTCTGCACTGCCATGAGCGGGGAAAAAAATCAATTGATTTTCGTCGAAAACAAACTTCTTAGTCCCTCCGCCCCGCAGTCTCTCAGACTGAAGGTAAACGGGCTCTCATGAAAAAAAGGAAACCCGTTTGTTCCCTGAAGAGCTCTTTAGGAGGGTTGGACGTGTGGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU31335 True 803 lncRNA 0.38 3 5144569 5153318

Neighbor

gene id symbol gene type direction distance location
CI01000004_05113181_05116553 AMY2A coding downstream 27991 5113162 ~ 5116578 (-)
CI01000004_05073667_05096493 NA coding downstream 47285 5072918 ~ 5097284 (-)
CI01000004_05001695_05020719 NTNG1 coding downstream 123762 5001617 ~ 5020807 (-)
CI01000004_04980768_04988531 NA coding downstream 155031 4980552 ~ 4989538 (-)
CI01000004_04909539_04912655 NA coding downstream 231856 4909539 ~ 4912713 (-)
CI01000004_05232776_05234535 NA coding upstream 79111 5232429 ~ 5235527 (-)
CI01000004_05248429_05300603 ABCA4B, ABCA4 coding upstream 95111 5248429 ~ 5300603 (-)
CI01000004_05318592_05325105 NA coding upstream 165274 5318592 ~ 5325105 (-)
CI01000004_05337445_05339997 NA coding upstream 183595 5336913 ~ 5340567 (-)
CI01000004_05355484_05357726 NA coding upstream 201948 5355266 ~ 5357799 (-)
G27685 NA non-coding downstream 180341 4961931 ~ 4964228 (-)
G27672 NA non-coding downstream 252344 4891700 ~ 4892225 (-)
G27642 NA non-coding downstream 337028 4805698 ~ 4807541 (-)
G27615 NA non-coding downstream 368975 4773738 ~ 4775594 (-)
G27603 NA non-coding downstream 419464 4724532 ~ 4725105 (-)
G27755 NA non-coding upstream 53438 5206756 ~ 5208585 (-)
G27859 NA non-coding upstream 87028 5240346 ~ 5245574 (-)
G27873 NA non-coding upstream 100356 5253674 ~ 5253923 (-)
G27890 NA non-coding upstream 144193 5297511 ~ 5297995 (-)
G28026 NA non-coding upstream 290705 5444023 ~ 5444465 (-)
G26788 NA other downstream 1868848 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 3369628 1772928 ~ 1774942 (-)
G27746 NA other upstream 24909 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 467065 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 1381509 6538904 ~ 6541252 (-)
G29388 NA other upstream 1477975 6631293 ~ 6631907 (-)
G29656 NA other upstream 2811046 7964364 ~ 7965500 (-)

Expression


Co-expression Network