G27746


Basic Information

Item Value
gene id G27746
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5178227 ~ 5203724 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU31341
ATTATATTATTATTTTTATTGTATTGTATTATATATTAACAACATTGTATACAGCGACAGGTCTACATTAGGCTTAGGCTTCATTTACATTGCAAGGCCTAATACATAGGTCCAATATTCTGACACGAAACATATAAGTGTTTCATCAATATCCTGCAAGGTGGCCATTTTGACCAAAGTGCATTTGATTGCTTTCACGCATTAATATGGGTGCACTTCACAGAGAGCACATGCACATACTGTATCGGCGGTAATGACAACAGGTCTGAATCTCTGATCATATTTCATGTATGATTCAAATGCAATTACTGACAAAGTGACGGACTTACTGATTAGGCCTGACTCATTCAGTGTGATCAGACTGCGTGGGATCAGATCACACACCAAACTGGGCTCTCAGTGACAACATTACTGGTCATTAAATTCACCACCTGCTGACTGTGCCTGGTCCAGAATTTGCCTGATGTCACTTCACTAATAGAGGCAAAGCTTGCAGATTGATCGTTTGCAGTGACAGAGTTTCCATGGTAACACAGGTACTTACAATGGGGCCAGGTGGGCCCTGTGGACCCTCGCCTCCCTTCAGACCAGATGGACCCGCTGCGCCAGGAAGCCCCCTTTGTCCTGGGAACCCTTTCAATCCGGCAGGGCCAGGTTTCCCAGAAATCCCCTGAGGACCTGGATCACCCTTTCCACCTTCTTTGCCAGCAGCTCCGGGAAGACCTTGCTCTCCAGGGGGCCCTGGAGATCCAGGATGTCCTCTCTCTCCAACAGGACCAGTTTCTCCAGTAGAGCCCTGTGGGCCAACAACACCTCCAGGTCCTGGAGGTCCAGTCTTTCCTTGAAAACCAGTCTCTCCTCGCTGTCCAGGGTGACCAGGCAATCCGTCCTTTCCAGCAGGCCCAGGTGGGCCTTTAGGGCCTGGTAATCCAACAGGGCCCTGAGGTCCTTGGGGTCCTCTCTCTCCTGGGCCACCAGATGGTCCATCATTTCCTGATGTTCCCTTTGGTCCAGGTTTTCCTGTTGGACCTCTGGCACCTCTTCCACCACGGGGTCCCGTTGGACCTCTTTGTCCTCTTGGACCCGCTTTACCAGCGATACCCCTTCCTCCCTTCTCACCATTGGATCCAGGGAAGCCAGGGAAACCAGTAGAGCCCTTAGGACCTTGTCTTCCCGGGTATCCAGGCAAACCTGGAACACCAAGTTTTCCCTTCTCTCCTGCCGTGCCCATAGGACCAGCCTCTCCGGTGGGACCTGATTTACCTTTGGGCCCCTCTGGTCCGTCTTCTCCTCTGGGGCCCAAAACACCACCCTCTCCCTTGTCACCCTTGAGGCCCATGTCGCCCTTGAACCCAGGAAAACCATCTTCTCCCTTCTCGCCTTTGCCGCCCTTCAAGCCACGAACACCCTCGGCACCCTTCACACCTCGGGGGCCGGGATAACCAATGGAACCCTGGGGACCTGGGTGGCCAGCTGCTCCTTTCTCCCCGGGAGGACCCTCTTTCCCAGGATGACCAGGAGGCCCATCAGCCCCAGCCAGCCCATGGAGCCCCTGTTTTCCACCAGGACCTTTCTCTCCAGGTGGACCAATCGGGCCTTGAGGACCAGGCAGACCATGTGGACCAGTGTTACCCTGTTGCCCAGGGGGTCCAGGCTCTCCTTGAGGACCCATATTTCCTTTAGGGCCAGGTGGTCCATCCAATCCAGGAAGACCACGCTGTCCAGCGGTACCAGGAGATCCTCTGGGGCCCAGCAGTCCTCTTGGACCACTTTCTCCTGGCATTCCCCTCTGTCCGATCTCACCATCCTCACCCCTTGGTCCATCCTCTCCTGGAGGGCCTGGTAGGCCGATGGGACCTGTCTCACCTCTGTGTCCCTTCTCACCAGGTAAGCCAGGAAGCCCATCAAATCCTCGGTCCCCCTTGGCTCCTGATTCTCCAGGAATTCCTCTGGCTCCGTCGGCTCCATTTCGGCCCCTCTTGCCTGGTTTTCCAGGTGATCCAGTAGGGCCTTGAAGTCCTCTTGGTCCCTGTGGGCCAGAATCTCCACTTTCCCCTTTAGCACCAGGTGCACCAGGACCACCCACAGGGCCGGAGCGTCCTGTCAATCCCATTGGAC
>TU31343
AGAGGATACAGCCTGAAGCAGATCAAGTCACAACATTGTACATATACTGTACAAAACAATAATTAGCACATATTATAAAGACAATTCTGCAATCTATTTTTTTTCTGTCGTAGGTGATTTTGCATTACACCACACACTCATTTCAACTGATTAAGGCCATTTTGGTGCTGATAGTCACTGAAATTGCCATTTAGCTATTGTCCTGTCATCTGTGTGTCTCATTTTAGAGGCTGGAGACAGAGGACAGGGTAGTTTGCTTACCTTCTCGCCTTTGCCGCCCTTCAAGCCACGAACACCCTCGGCACCCTTCACACCTCGGGGGCCGGGATAACCAATGGAACCCTGGGGACCTGGGTGGCCAGCTGCTCCTTTCTCCCCGGGAGGACCCTCTTTCCCAGGATGACCAGGAGGCCCATCAGCCCCAGCCAGCCCATGGAGCCCCTGTTTTCCACCAGGACCTTTCTCTCCAGGTGGACCAATCGGGCCTTGAGGACCAGGCAGACCATGTGGACCAGTGTTACCCTGTTGCCCAGGGGGTCCAGGCTCTCCTTGAGGACCCATATTTCCTTTAGGGCCAGGTGGTCCATCCAATCCAGGAAGACCACGCTGTCCAGCGGTACCAGGAGATCCTCTGGGGCCCAGCAGTCCTCTTGGACCACTTTCTCCTGGCATTCCCCTCTGTCCGATCTCACCATCCTCACCCCTTGGTCCATCCTCTCCTGGAGGGCCTGGTAGGCCGATGGGACCTGTCTCACCTCTGTGTCCCTTCTCACCAGGTAAGCCAGGAAGCCCATCAAATCCTCGGTCCCCCTTGGCTCCTGATTCTCCAGGAATTCCTCTGGCTCCGTCGGCTCCATTTCGGCCCCTCTTGCCTGGTTTTCCAGGTGATCCAGTAGGGCCTTGAAGTCCTCTTGGTCCCTGTGGGCCAGAATCTCCACTTTCCCCTTTAGCACCAGGTGCACCAGGACCACCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU31341 False 2118 TUCP 0.48 28 5178227 5203724
TU31343 True 973 TUCP 0.41 14 5179993 5195103

Neighbor

gene id symbol gene type direction distance location
CI01000004_05113181_05116553 AMY2A coding downstream 61649 5113162 ~ 5116578 (-)
CI01000004_05073667_05096493 NA coding downstream 80943 5072918 ~ 5097284 (-)
CI01000004_05001695_05020719 NTNG1 coding downstream 157420 5001617 ~ 5020807 (-)
CI01000004_04980768_04988531 NA coding downstream 188689 4980552 ~ 4989538 (-)
CI01000004_04909539_04912655 NA coding downstream 265514 4909539 ~ 4912713 (-)
CI01000004_05232776_05234535 NA coding upstream 28705 5232429 ~ 5235527 (-)
CI01000004_05248429_05300603 ABCA4B, ABCA4 coding upstream 44705 5248429 ~ 5300603 (-)
CI01000004_05318592_05325105 NA coding upstream 114868 5318592 ~ 5325105 (-)
CI01000004_05337445_05339997 NA coding upstream 133189 5336913 ~ 5340567 (-)
CI01000004_05355484_05357726 NA coding upstream 151542 5355266 ~ 5357799 (-)
G27740 NA non-coding downstream 24909 5144569 ~ 5153318 (-)
G27685 NA non-coding downstream 213999 4961931 ~ 4964228 (-)
G27672 NA non-coding downstream 286002 4891700 ~ 4892225 (-)
G27642 NA non-coding downstream 370686 4805698 ~ 4807541 (-)
G27615 NA non-coding downstream 402633 4773738 ~ 4775594 (-)
G27755 NA non-coding upstream 3032 5206756 ~ 5208585 (-)
G27859 NA non-coding upstream 36622 5240346 ~ 5245574 (-)
G27873 NA non-coding upstream 49950 5253674 ~ 5253923 (-)
G27890 NA non-coding upstream 93787 5297511 ~ 5297995 (-)
G28026 NA non-coding upstream 240299 5444023 ~ 5444465 (-)
G26788 NA other downstream 1902506 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 3403286 1772928 ~ 1774942 (-)
CI01000004_05617072_05627369 NA other upstream 416659 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 1331103 6538904 ~ 6541252 (-)
G29388 NA other upstream 1427569 6631293 ~ 6631907 (-)
G29656 NA other upstream 2760640 7964364 ~ 7965500 (-)
G29746 NA other upstream 3150774 8354498 ~ 8358127 (-)

Expression


Co-expression Network