G29091


Basic Information

Item Value
gene id G29091
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5784288 ~ 5792698 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU32904
GTTCACCCAAAATATGTAAATTCTGTCATTATTTACTCATCCTCATGTTGTTACAAAAACCCTGCATGACTCTGTAAAACACAAAAGTCGATATTTAGATATTTAGCAGATTGTCCAAGCTGCTCTTTTCCATATAATAAGAACGAATAGAGACTACGATATCCCTGGTTCCCATTCACTTTCACTGTATGACAACAGTTTCAAAAATATCAGAAATGTCAAATATAATTAACATTGAAAAATATCTAATAAAAAATGAAAAAATAACAGCTTAGAATATCAGGAGAGAAAGTCTTACAAGTTTTAAAAATGAGGTTGAAATAATGTTGACAAATTATTCATTTTTGGGTGAGCTATACCTTTAATGTTTGTTAGTTGTTTTAATAAAGGCAACACTTACTATTTTATCTAAATATAAAGAAAAAAGCAATGAGCCCTTATTAATAATAAATAAGGGCTCACTAAGATGACCTTGACATGGACATCTGAATAATAAAAAAAACAACACCACAAAAACACATGACAGACTCATTCATTAGCACAGATAAACCGATAATGAAGGTGTCCTAAACAGCTGTCAGCCACATACACACACACACACACACACACATCATGAGGTTTGACAGTCACTCGGGTTTTGCTCTACAACAAGAGCACATCTGAAAGGAAGCTTCAGTGTTTCTTGTCTCGCTGGCCACTTTGGACAATCTCAGAGTTCCACAAAATGTGCGTGTTGGGCACTATGCGGTTTGACCCAGTTTCTCCATCTGTATCTGTAATGCTGCAGTTGACGGGTCCTCCGCGCCGTCTCTTTTGCCCTTCCGTCCAGCAGAGTAGGAAAAGGCGTTGTTGACATTGGAGCTCTGATCAGGGTGGATGTTCCTGCTTGCATCATCTTCACCATCTCCAATAATCACCAGCTCTGCCCGAACTGAGCCCTCATAGCTCTGGCTGTTGTCTTCGGCATTCTGGTAGCCCATGAAGATCATGGTGACGGGCTCGTCCGATGGCATGGCATTCAGGATGCTGACTTTGGAGTCCTCAGAGAAGGCCGAACACGGGCTGTGGTTTCTGATGTCACAATCCAAATGCCGCGTTCCCAGGTTGTTCTCTCTTTTATTGTAATATTGTCCATGCGCGTGTCTTTCCCCTCTATGTAACTCACGACTGTAGTTGTTCCCATTGCCGTTGTGATAGTATTCGTCTGGTCTGTCATTATAATCAGGCATTGGAAGGAGTGGAAGTCTATGACCCGCGTCCTCCGGATAGCGAACACCATCATTGTACACAAGCTCAGGCCATGCAGATAAGTCGATGCTGTAGGGATCTTGGTATCCGTTGGATTTGTGGCTCTCCCTGTTATTGGGGTCTGATTGTAGTTCATGGGGGATGTTGTAGGGATATGAAGGGTCCATTTGAACCTGATTGGACCTCTTCTTTTTCTCAGAGGCCTGTCTCAACAGCTCCTCAACCTCCACTGGACTGAGTTCATCCACTCCGTTCGCACCAGGCTGGTGGCCGTCCGTGCGTAAGGCATAGACGGACTTCCGGCCATCGTCGTAGACTTTGATGCCTCTCTGCTGGAGCTCTTGGGGAGAAATGGCGGAGGTGGACAGCACTTGGCTTTCACCTGTGCGCAAGTCCTTCTGAACGTTAATTTCCATAGCAAACAAAGCAGGTTTGGCTTGGTCATTTTTTTCTTTAGTTTCCAGGTCTTGTTTCTTCCTCTGATTTAATAGAGGTGTGCTGGGCTTTGGCATATTTGGAATTGTTGAATGAATATAGATTGGGTCTGAAATGAAATCTGCATTCACTGCCTTAATAATGTCCTCTGGAGATTTTTCAATGGCTTTTAGCCTCTTTAGAATCAGCCCCTCATTTGTTGAGATGTTCATTTCCTCTCTCTCCAACGCTTCAATTTCTTTCTCTATCCGATGTATATTACTCTTGAGGTGTTTCGTTTGTTGTGCATCTTCAAGAGCTTTTTGTGTTTCCTGTGCATTACTGCTGTTCATCCCATCCATGAGCCACAGATCTCTCATGGACCTTTTCTTAACATGTTGAAGCTTCAGTTTCTCTCTGTCGATCTCAAGCCTTTTGTGGGCAATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU32904 True 2109 lncRNA 0.43 7 5784288 5792698

Neighbor

gene id symbol gene type direction distance location
CI01000004_05709639_05728550 NA coding downstream 55497 5708626 ~ 5728791 (-)
CI01000004_05617072_05627369 NA coding downstream 155999 5616644 ~ 5628289 (-)
CI01000004_05490354_05581387 DPYDB, DPYD coding downstream 202901 5490170 ~ 5581387 (-)
CI01000004_05482165_05486129 NA coding downstream 296428 5481646 ~ 5487860 (-)
CI01000004_05373464_05376608 CNN3B, CNN3.L, CNN3A, CNN3 coding downstream 407680 5373318 ~ 5376608 (-)
CI01000004_05803106_05809498 NA coding upstream 10159 5802857 ~ 5809498 (-)
CI01000004_05843593_05862033 NA coding upstream 50808 5843506 ~ 5862544 (-)
CI01000004_05902667_05905718 NA coding upstream 109957 5902655 ~ 5906852 (-)
CI01000004_05942638_05967553 TPRA coding upstream 149906 5942604 ~ 5967553 (-)
CI01000004_05976527_05978831 PDCA coding upstream 182706 5975404 ~ 5979754 (-)
G29089 NA non-coding downstream 2134 5781902 ~ 5782154 (-)
G29084 NA non-coding downstream 14578 5769248 ~ 5769710 (-)
G29083 NA non-coding downstream 18256 5765599 ~ 5766032 (-)
G29081 NA non-coding downstream 22078 5761967 ~ 5762210 (-)
G29080 NA non-coding downstream 29103 5754884 ~ 5755185 (-)
G29111 NA non-coding upstream 34999 5827697 ~ 5830553 (-)
G29129 NA non-coding upstream 43949 5836647 ~ 5836905 (-)
G29130 NA non-coding upstream 45399 5838097 ~ 5838302 (-)
G29132 NA non-coding upstream 46824 5839522 ~ 5843297 (-)
G29153 NA non-coding upstream 175780 5968478 ~ 5969129 (-)
G27746 NA other downstream 580564 5178227 ~ 5203724 (-)
G26788 NA other downstream 2508567 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 4009347 1772928 ~ 1774942 (-)
CI01000004_06539836_06541252 NA other upstream 742129 6538904 ~ 6541252 (-)
G29388 NA other upstream 838595 6631293 ~ 6631907 (-)
G29656 NA other upstream 2171666 7964364 ~ 7965500 (-)
G29746 NA other upstream 2561800 8354498 ~ 8358127 (-)
G30316 NA other upstream 3585239 9377937 ~ 9406921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015366 palmda coding NC_007113.7 CM002886.2 20406399 ~ 20428140 (+)