G29111


Basic Information

Item Value
gene id G29111
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5827697 ~ 5830553 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU32926
CCAAGGAGACACAGCACTGCTCCTTTTGCTTAGTGATTTCATTGACACGGTAAGGCACATCGGTCAGGGCTGGTGAGAGAGGTGGAAGAGCTGGAACTCGTCCCACGCCACACATTTGGACCGATCCTAGAGCCAACAGCTTCACAAAAGATGAGCCATTCTGCACAAAACTTGACATCTGTTTGAAGGTCGCATCAAGTGCAGTTGTGTAGGCCCCAACCAGGATGGCATCAAAGTAACAGGGGATGAGATAGCGAGGGATGTGCTTCAGGTAAGTAAACATAGCCTGGAACCACTGTCCCACCTCGGCCAGTGTGCCCCCGCGTGACATCAGTCTATTGCTCACGTAGTCGATCATCCAATCCCCTTGCCTTAGGTTGTCACAGAACGGGTGGCCAAGATCGTTTTTGGGTCGAATGTCTGCCATCACCGACAACAGACCTTGCAGACCACCATATTTGAGTGCCGTCCAGCCGGGGATGTTGTAGCAGCCCCCTCCTTCTTCTTTCTCCTCTTCGTCACAACGAAACAGCAGAATGTTCATATCAGCCAGAGTCATCTTAGACATAATCTGTGTCAGGGTGCTCTTCAGTATGTCGGGTGTGTTTGGATCAGACAGACTTCCTGCTTTATACAGCGGATTGAACTGAATGAGATGGTTCCTCAACACACCAACCAGCTCCTGGGATTTGGGGTCCAGACTTACCCTGAAAGCAATAATGCTTCCAGGCGTCAGCTGCTCAAACACGATCTCCTGCACATATTCACTGCGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU32926 True 773 lncRNA 0.51 6 5827697 5830553

Neighbor

gene id symbol gene type direction distance location
CI01000004_05803106_05809498 NA coding downstream 18199 5802857 ~ 5809498 (-)
CI01000004_05709639_05728550 NA coding downstream 98906 5708626 ~ 5728791 (-)
CI01000004_05617072_05627369 NA coding downstream 199408 5616644 ~ 5628289 (-)
CI01000004_05490354_05581387 DPYDB, DPYD coding downstream 246310 5490170 ~ 5581387 (-)
CI01000004_05482165_05486129 NA coding downstream 339837 5481646 ~ 5487860 (-)
CI01000004_05843593_05862033 NA coding upstream 12953 5843506 ~ 5862544 (-)
CI01000004_05902667_05905718 NA coding upstream 72102 5902655 ~ 5906852 (-)
CI01000004_05942638_05967553 TPRA coding upstream 112051 5942604 ~ 5967553 (-)
CI01000004_05976527_05978831 PDCA coding upstream 144851 5975404 ~ 5979754 (-)
CI01000004_06016711_06021356 PTGS2, PTGS2A coding upstream 185829 6016382 ~ 6021356 (-)
G29091 NA non-coding downstream 34999 5784288 ~ 5792698 (-)
G29089 NA non-coding downstream 45543 5781902 ~ 5782154 (-)
G29084 NA non-coding downstream 57987 5769248 ~ 5769710 (-)
G29083 NA non-coding downstream 61665 5765599 ~ 5766032 (-)
G29081 NA non-coding downstream 65487 5761967 ~ 5762210 (-)
G29129 NA non-coding upstream 6094 5836647 ~ 5836905 (-)
G29130 NA non-coding upstream 7544 5838097 ~ 5838302 (-)
G29132 NA non-coding upstream 8969 5839522 ~ 5843297 (-)
G29153 NA non-coding upstream 137925 5968478 ~ 5969129 (-)
G29172 NA non-coding upstream 213807 6044360 ~ 6045307 (-)
G27746 NA other downstream 623973 5178227 ~ 5203724 (-)
G26788 NA other downstream 2551976 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 4052756 1772928 ~ 1774942 (-)
CI01000004_06539836_06541252 NA other upstream 704274 6538904 ~ 6541252 (-)
G29388 NA other upstream 800740 6631293 ~ 6631907 (-)
G29656 NA other upstream 2133811 7964364 ~ 7965500 (-)
G29746 NA other upstream 2523945 8354498 ~ 8358127 (-)
G30316 NA other upstream 3547384 9377937 ~ 9406921 (-)

Expression


Co-expression Network