rcor2 (rcor2,LOC107691911,LOC107750597,LOC107588183,LOC107562174,LOC107668449,LOC107749809)


Basic Information

Item Value
gene id rcor2
gene name rcor2,LOC107691911,LOC107750597,LOC107588183,LOC107562174,LOC107668449,LOC107749809
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 1439114 ~ 1447857 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043243295.1
CTCGGTTGTGAGGAGTCCTCTGGTCTCCCCggcacatacacacacggaTAGGATCCCTATGCGGCCGATGCAATGAACTGGAGAGAATGAGAAACGTGCGAATATCCACAGAAGCGTTGATGTAGTTGCATATCAACAAACGTACGGAGCGCTGATGTTTTACACCACTTGCTTGTCGCTTGATAAGTTTGAATAGGAGAGAAAGCGAGCAAGCCAGGTAGTGAACTGCTATTTGGACTGGTAACTAACGTTATAAGGCAAATGTTCAGCGACAGCTAGCCAACAACTGGAATAGGGACATAAGCGTGGCTCCACACAAAAGGACTCAGATTGAGTGAGCGGCTGTGCGAAAAGTGAGCCATGCCATCAGTGATGGAGCGATCAGGGTCTGGTGTGCTGTCCCGAAGCAGGGCCAAAACAGTCACAAACGGGAACAGCCAGCACTCTGAGGAAGAGAGCAGTGATGAGGAACACACACATGACAGTATGATCCGCGTTGGTGGGGACTACCAGGCACAGATCCCAGAGTTCAAACCAGACTGTGCATCCCGCTACAGTGAGTCTGACCAGAGGAGCATGCTGGTCTGGTCACCAAACACCCAAGTGTCCGATGCCATGTTGGATGAATATATTCTAATGGCCAAAGAGAAGCACGGATACAACATGGAACAGGCTCTTGGCATGCTTCTGTGGCACAAGCATGATGTGGAGAAGTCACTGGCTGACCTGGCCAACTTCACTCCTTTTCCCGATGAGTGGACAGTGGAAGACAAAGTTCTATTCGAACAGGCTTTCAGCTTTCATGGCAAGAGCTTCCATCGCATCCAACAGATGctTCCAGACAAGCTGATCTCGAGCCTGGTGAAATACTACTACTCTTGGAAGAAAACCAGAACCCGGACAAGCGTCATGGACCGCCAAGCACGCAAGCTCCTCAGCAAGAGAGAAAAGGATGAGAGTAACGATGAGATTGAGGAAGGCGATCCAGGCAGTGACAGTGACTTTGAGATCAATGCCAAGAAAGAGGCGACAAAGCAGAGCTCTGGAAACGGAGGAGGAAGTGATAAAGGTTCAAGCAAGTCTGGACTGACTCGGAAAGAGAACCAGGGTGCGCAGTACCGCCACCACCCTCTTCGAGCTCGCCGCAGGCCTCCTAAAGGCATGCACCTAGAACAGGAGGACATTGTTGCTCTCTCAGCATCCACTGATTCAGGAGCTGTTAGTCTCAGACATCTGGACACTCAGTTAGTGTCACTGAAGAGACAGGTCCAAAGCATCAAGCAAACCAACAGTGTTCTCAAGCACAACTTGAGTGATGGCATTGACGGCTTAAGACCGTCAGAGCCCACCCAAAAAATCAACTCTCGCTGGACAACGGAGGAGCAACTCCTGGCTGTTCAAGCCGTCAGGCGATACGGTAAAGACTTCGCAGCCATAGCGGACGTGATTGGCAACAAGACGGTGGCGCAGGTCGGCTCGTTCTTCGTCAGCTACCGGAGACGCTTCAATCTCGAGGAGGTGCTACGTGAATGGCAGGCAGAGCAGGAAGTGGCGCAAGGGGGAAGCGGGAGGACCGTGAGCATGGAGCTGAACGGGTCTTCGGGAGCGGAAGATGATGAGGTGAAGATGGACGGTGTCTCTCCGCCTCACTCTGACAGTCCACTGCCCACTTCTGATGCTAGTGCGGCTGGGAACCCCAACTCTGCCCAGTCCTCCCCACCCCTCACTCAACCTCCACCCTTACTGCGGCCTGCACCCCCCTCAGCACCCCCCAGCCTGCTGCGCCAGCCTCCGCTTCAGACGCGACCTCTACAAAACCGGACGCCCCACAACCACCCTCCCCCTCCGCTCATCAGACCCGCGGTGGCGTCCTCGCTCCACCAGGGGGCACTGAGGAACTCTCTAagttcctcttcctcctctgccGGACAGCTGCCGCCCTCACTAGTGGGCCTGAAGGTGGAGTCCCCGCAGTCTCACTGATCGCCGTGTAGTATTTGCCCTTTCATAATGATTTCCCACACCCAAATAGTCATTTAACAgagaatttgtttttaaatcgcTGTAAAAGGGCAACGTGTAGTAACGCCTCTCAAAagatagggaaaaaaaaacaaagctggaCATGCACCAGCTATACAGTGTCATCCGATTCTCCACTACAGGACCAAGGAGAAACCTCCGTactatacatgcatataaaccagaaaaaaaaccaaaccaaaccctACTGCCCCACAAACCCATCTGTCCTCAGGTTCTACAGCTTTACCTCGTGAACAGTCTTAAGCACAACAGCTTCCACTGCAATTACAGCTATTGAATCACCTTCTGTAAGTAAGCGGAAGTTGGAAGTTTAACCAAAATTGTGGGGTAAAAACCTTATACACTGGAATTAAAAACTGCCACGAAACAGACTCATTTGAGTTCCTTCCATCATCTCTATGGCAACAGCAACGTATCATCTAGTGTGCATGACTACAGAGGCACTAGCGAGTGTTCTGAAGTGCACCTGGTGTCAGGAAACTGGGAAATTGTGTAAGCTCACTCTCCCATTGAAGAGCCATGTCGATAGTCATACCGGGTGAAGCggttttgttgtttgtataaTTAGGTCCTTAAGATATTGTTAGGTAGTGAATTTATGTAGTACTAGTTAATATTGACTAAGCACTAAGTGATGCaaaatacttgatttttttgttgcaacTCTGGAATACACTGATTTCGTCTCGCTCTTAAAGGCACAAACACAGAGGCATCAAAACACTAAAGATGATTCCCGAGGAAGCTCGTGCAAGAGTTCTCGTTTCTTCCAAAATGTTGTATGTATGTGAGAACTGTTTACATGTGAACTGGATTTGCTTGtgactatttttgttttagatttttttttttcaaaataaagtgaaaa

Function

symbol description
rcor2 Predicted to enable transcription corepressor activity. Predicted to be involved in histone deacetylation; negative regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex and transcription regulator complex. Is expressed in brain; pectoral fin; and ventral mesoderm. Orthologous to human RCOR2 (REST corepressor 2).

NR:

description
PREDICTED: REST corepressor 2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043243295.1 True 2914 mRNA 0.49 14 1439114 1447857

Neighbor

gene id symbol gene type direction distance location
adad2 LOC107588220,LOC107749835,LOC107668536 coding downstream 52932 1382135 ~ 1386182 (-)
LOC122349396 LOC107563097,LOC107741473 coding downstream 59023 1374479 ~ 1380091 (-)
LOC122349395 LOC107691994,LOC107749836,LOC107575807,LOC107741479,LOC107563369 coding downstream 65218 1366838 ~ 1373896 (-)
fam113 LOC107741458,LOC107691916 coding downstream 72799 1363255 ~ 1366315 (-)
otub1b otub1b,LOC107588177,LOC107668564,LOC107691913,LOC107562237 coding downstream 77249 1357913 ~ 1361865 (-)
arl2 arl2,LOC107588185,LOC107668402,LOC107749806 coding upstream 25500 1473357 ~ 1475372 (-)
gpha2 gpha2,LOC107749831,LOC107588222,LOC107668374 coding upstream 53382 1501239 ~ 1504037 (-)
LOC122349649 majin coding upstream 58345 1506202 ~ 1509910 (-)
badb LOC107749804,LOC107750664,LOC107691899,LOC107562077,LOC107588192,LOC107669205 coding upstream 64295 1512152 ~ 1514579 (-)
LOC122349772 nudt4b,LOC107555891,LOC107662198,LOC107708005,LOC107576967,LOC101067274,LOC103028168,LOC108275142,LOC108438514 coding upstream 435173 1883030 ~ 1890771 (-)
G49023 NA non-coding downstream 359922 1078963 ~ 1079192 (-)
G49011 NA non-coding downstream 442615 996084 ~ 996499 (-)
G49004 NA non-coding downstream 456352 982339 ~ 982762 (-)
G48985 NA non-coding downstream 491952 946464 ~ 947162 (-)
G48936 syt4,LOC107562593,LOC107742284,LOC107691948,LOC107588142,LOC107668880,LOC107753936 non-coding downstream 535214 899143 ~ 903900 (-)
G49186 LOC107691905,LOC107562132,LOC107750593,LOC107668381,LOC107588184 non-coding upstream 17332 1465189 ~ 1468013 (-)
G49210 NA non-coding upstream 49466 1497323 ~ 1517408 (-)
G49231 NA non-coding upstream 159014 1606871 ~ 1607083 (-)
G49239 NA non-coding upstream 250592 1698449 ~ 1698762 (-)
G49241 NA non-coding upstream 251449 1699306 ~ 1699636 (-)
G49133 LOC107691997,LOC107741482,LOC107563408,LOC107668708,LOC107588219 other downstream 218221 1169981 ~ 1220893 (-)
zgc:153151 NA other downstream 392797 1040922 ~ 1046317 (-)
zgc:162171 zgc:162171,LOC107588217,LOC107753986,LOC107742285,LOC107691949,LOC107668889,LOC103045050 other downstream 550156 880586 ~ 888958 (-)
LOC122348397 zgc:92429,LOC107588137,LOC107753943,LOC107668941,LOC103044742,LOC108434854,LOC108267498 other downstream 609444 819637 ~ 829670 (-)
G48823 LOC107667730 other downstream 1164616 270369 ~ 274498 (-)
G49309 LOC107658783,LOC107708003 other upstream 450226 1898083 ~ 1898826 (-)
LOC122348471 pwp1,LOC107658969,LOC105905702 other upstream 453733 1901590 ~ 1907162 (-)
chst10 chst10 other upstream 1990892 3438749 ~ 3465586 (-)
LOC122348141 NA other upstream 2818411 4266268 ~ 4268884 (-)
trnar-ucu_8 NA other upstream 2836552 4284409 ~ 4284499 (-)

Expression


Co-expression Network