G29208


Basic Information

Item Value
gene id G29208
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6285477 ~ 6298068 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU33060
AGCTGATTCACTGACAGATCTATAGTGTCTGTTACATGCATATTAAAAAGTGATTTTCGACAGTAATGATAAATTGTAATTTTACATTCAGAGTACACCAAAATTACCAAAACAAATTATTATGGTAAAAGATTAAAAAAATGCTACCAAAAATGATCATACTACATGATGATTCAAGAGAACAATTGATTTCTGGGCCGCACCACTGTTATCTCCTTCATATACATGTTCTTGTAAGAGGACAGGAGATCACTTATTTTATAACCCAGTGAGGTCTCACAGAGCAGAGTGTTGCCCTGCACTAGATTGCCAATGGTCATGTGAAAATAGGTGCTTCCGCTAGACCAGGAAGTGATCTTACTGAATAGATGCATCACAAGCACCTCCTTTGTCTTAGGGTTGGTGATGCTAACTCCTAGTTTGCTGATTGATATCATGATAACACTGGGGTAACTTTTCTCTGATGTTTGCTTTACTTCGAAGAAAGCACATCCAAAGGTGGGCCACTGTGAGATCATCTTCAGGAACTGGAGTTTGGCTTCATCTACAGTTATGCCTGCCTGCTTGTTATATGAGTTGATGATGTGCTTTTTCCAGTCCTCAGGAGTCATGATCCTGTGCTGATCAGCTGGAACCAGATCTTTCAGCATTCGAGGGATCATGACAAACTGTGACTTATCCGTGTCAATCCGAGTACGGAGCAGCAGTCCTCCCAGAAAGATCATGTCCTCTTTAGACACACTATGGTAACCCCGCAAATACTTCGGCACTTCCTGAGGAAAGTGGAACGTTAGGTCAGCGGTTAGATCTTTCCCTGGGATCACATTAAACCAGAGCTTCCTCATGAAGAGCACCAGGTAAGGAACAATAGTTGAAGGAGCCTCCTTGACTTTCTTTCCTTTTTTAACGACCTGATCTGTGAGTTGCCTGAGGTTGTCGAAAAAGTACTCTTCAGAATCCATACTTACTACCTTATTGGCTGTTTTCACAAACAGACTGTATCCATCCGATGAGGAGAGTCGGAGGTCTTTAGAAATTTTGCGACATAAGTCTCTGATCCTTGTGGTGGTGGTCACCTCAAATATTTCAGATGTATCGTTGGGAAAATGAACTTTGTGGAAGATCTGAGTGCTGTTATTCTGAATGGCATCCACTTCCACCTGGTGAGGAGGCAACTTCCTTCCCTCGATGCTGAGCATGGCTTGCATCCTCTGCAGGCAGGTGGAGGCCAGTGGCTCTCTGGGTCTGGACTCCAGAAAACGTTGAGCATGCCTCAGTAACAACTGACTTGGAGGAAAGAGACCACAGCACAGCCACAACAGCTGCCATCCTCGCTCCATACTCAACCCATGTTTGTTATTAGTCATCTGCTTCATTATTTGGCAGTAGATCTCATCTCTTAGCTCGACGTGCGCTGTTGCTGGCCCAAAGATCTGGTTTGTTAGATCTATGGGTGTTCGCACATGTTTGACTGGATAATCTCCCATATATTTAAGGATAGCTGTGAAGGAGTCACAAGCGAGATGGCAGAGCTCTGAGTTGCCCTGCAGGTTCCTGAGCAGTGGTTGTTTCAGAGGCTCTTTGCTGTTGGCCCATAGTTTCTCTTTGGCTCCTCCCTTACGACCTCCTTCCTTACCGGACTCCCTGAAATAATCGAAAGAGAACTCCTTGAGAGTCATGTGGGCAACTCTCTCTGTGCTGATCTCCTCCATCTGCGGCAAGACCGGCATCACTGACTTTCTCCGTGCTGGGGTCAAATTCAGCAAATTCAGTGTTTCTTCTGTAGGCCTAGTCAACATCGGTAGAATCTGAATAGCATCTATGGAAACTGCTCCAGTTTGACTTGTCCTCTCATTCCTTGCTTTGATCCAGCCGTCTTCAGAAGCATATTCTCCATCCTTTATGATAAACAGCACATCACCCCTTCTGAAGCTCAGCATTGTGGGATCCTCTTGTCTGCTAAGGTCCTGTATTGCCACAGCATACTCAGATCTCTTCTTAAGCCCTGAGATGAACTTGTTGACCAGATGCACAAATTCTTTTCCCTTCACAACCTTCAGCTCATACATCCCCTTTGGAGTTGTCAAACATACAATCCCACTAGACTTTTCCTCACTCATCATTTCGATTCTTGACACCTCAGGATAAGAGAGCTGCAGAAATGCGGCTTCTGTCTCGTCCTGAAAGAAGACCCCCTTCCAGTTCACGACAACTACAAACTGTTCTTCAAACATTGATGGACCTGAAATCATGCGAGCCTCATATAACTTGGAGAAATAGACTGGCCACTTCTGCCGTGCGTATTGGACAATCTCTCCTTTCACTTCATAGGCAGGTGTAGTAGAGTTTATGTAAGGACCCTGTGTGTGTGCAGAATGGACCAACTGCACTAGTTTGACCAAAGACTTGTTCTCAATTATAGTCATGTTCATGCACTCGCGAACAATCTTCTGGGAAGTTTCCATACTGCTTTCAGAGCCATGCTTTATATAGTAATGTTTGGCTGCGAGCTGCACATAATCATCCTCCTTATCAGACTGATAGTCTCCATGTTTGAGTCCATGGATGATCTGCCTATAGATGAGGTCTGTGCTGACTTGGTCAGATGAACAGTCATGCCACGGAGTGAAGATTTCTTTGCGGAAATAGAGGCGCCAAGGAGCATGCTGTTCCTCTCTCCCCTGCCTCTTTTCTTCCTGCTCACACATAGACACGGCATCCAAGACATGCTGACTGCCACTGCCTAGAGACCACATCTTCTCATTCATTGCAGCATATAGGGAGAAGCCATAAGTGTCCTTCAGGTTTATTTTCTGGATAACTGTATTGCACACCTCTGCAGAAGTGCTGGCTGAGTCCAAATGGAGGTTGATGCTTCTGCCATCCATCAGACTCACAACCACTGCAATGGGGTTCTTGGTCTCTACAGACTGTAGTTCAATCCAGCATGGTGGCTCACTTCTTTCTCCATTGGCTAAAGTCCTCCGCAGTCGCTCCGCACAGTAGGAGGAGTATTCACTCGGCCCATGGCATATAAAGCTATCCAGGTACTTAGTGAGGCGGTCTGTAGGGGAAAAAATGCCCAAACAGATGGACAGAAGGATCCAGCCTCTGTTTGCACTTTTGTGGTTCTTATTGTCTGTTAACTGCTTACAGATCTGACAGTAGATTTCATCTCTTATATCTTGTCGTACAATGGCATATCCCACAATAGTGTGTAATTTCTCCAAGGGTGTCATTGGACGATCAAAAGTTGGTCCCTCTCCAAACATTACATCCTCTTCCTCCTGAACAGCCTCCATTTTAGGTTGTGGTACTTCTTCTGGCTCTTCTTCAGGAATGGCTGAGTGTTTTCGTTTCCCTGTCCCCTTCTGCTGCTTCATTTTTTTTCTCAAAAATTTCTGATCTAATCCAACAAGGTTACTAAGTCGTCGTGCTTGTCTCTGACCGAGGTTTCTCTGAATGGGGTCGGCTATAGCAGAAACACGTTCTTGCTTCGGCTCTGGAAGATCTCCCATAAATCTTAGTATGATCCACCATACTGTCAAACTGGCCAGGGTATCCCCTTCATCCTCATGGTAGAGCAGGGGTTTCCGCAATCTCTGTTTGATATGTGAGTGGGTAGAAGATCCTTGAAAGTGTAGAGATGCAAATATAGCGAAAGAGAACTCATCATCCTCAGCTTCTTTCTTATCCTCAGCTTCTTTCTCTTCCTCTTTATCATCTAGATCGTCTTCGCTGATGTCTGGTACTGACATCACTTTCCTCTCCCTTACTGGGCTCTCTACTAGTTCAACCTCTTCTAACTTCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33060 True 3813 lncRNA 0.38 26 6285477 6298068

Neighbor

gene id symbol gene type direction distance location
CI01000004_06221889_06232315 MKNK2, MKNK2A coding downstream 53162 6220798 ~ 6232315 (-)
CI01000004_06200669_06208703 CSNK1G2, CSNK1G2A coding downstream 76774 6199746 ~ 6208703 (-)
CI01000004_06183916_06192361 MFSD12A coding downstream 91999 6183130 ~ 6193478 (-)
CI01000004_06121326_06137773 NA coding downstream 147704 6121286 ~ 6137773 (-)
CI01000004_06074774_06078306 RNF2.L, RNF2 coding downstream 206223 6074669 ~ 6079254 (-)
CI01000004_06308316_06314451 AMOTL2B coding upstream 10198 6308266 ~ 6315005 (-)
CI01000004_06325293_06337484 NA coding upstream 26944 6325012 ~ 6337484 (-)
CI01000004_06339829_06343806 RAB6B.L, RAB6BB, RAB6BA, RAB6A, RAB6B, RAB6C, RAB41 coding upstream 41167 6339235 ~ 6343806 (-)
CI01000004_06345732_06359362 ESPNLB coding upstream 47553 6345621 ~ 6359521 (-)
CI01000004_06365131_06390103 KIF1AB, KIF1A, KIF1AA coding upstream 66548 6364616 ~ 6390103 (-)
G29233 NA non-coding downstream 109577 6175696 ~ 6175900 (-)
G29172 NA non-coding downstream 240170 6044360 ~ 6045307 (-)
G29153 NA non-coding downstream 316348 5968478 ~ 5969129 (-)
G29132 NA non-coding downstream 442180 5839522 ~ 5843297 (-)
G29130 NA non-coding downstream 447175 5838097 ~ 5838302 (-)
G29188 NA non-coding upstream 101571 6399639 ~ 6403721 (-)
G29385 NA non-coding upstream 329506 6627574 ~ 6627791 (-)
G29386 NA non-coding upstream 329908 6627976 ~ 6628269 (-)
G29387 NA non-coding upstream 330998 6629066 ~ 6629470 (-)
G29391 NA non-coding upstream 357155 6655223 ~ 6656385 (-)
CI01000004_05617072_05627369 NA other downstream 657963 5616644 ~ 5628289 (-)
G27746 NA other downstream 1081753 5178227 ~ 5203724 (-)
G26788 NA other downstream 3009756 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 4510536 1772928 ~ 1774942 (-)
CI01000004_06539836_06541252 NA other upstream 236759 6538904 ~ 6541252 (-)
G29388 NA other upstream 333225 6631293 ~ 6631907 (-)
G29656 NA other upstream 1666296 7964364 ~ 7965500 (-)
G29746 NA other upstream 2056430 8354498 ~ 8358127 (-)
G30316 NA other upstream 3079869 9377937 ~ 9406921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location