Gene
RNA
| Item | Value |
|---|---|
| gene id | G29188 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 6399639 ~ 6403721 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU33029 | True | 3370 | lncRNA | 0.38 | 3 | 6399639 | 6403721 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_06365131_06390103 | KIF1AB, KIF1A, KIF1AA | coding | downstream | 9536 | 6364616 ~ 6390103 (-) |
| CI01000004_06345732_06359362 | ESPNLB | coding | downstream | 40118 | 6345621 ~ 6359521 (-) |
| CI01000004_06339829_06343806 | RAB6B.L, RAB6BB, RAB6BA, RAB6A, RAB6B, RAB6C, RAB41 | coding | downstream | 55833 | 6339235 ~ 6343806 (-) |
| CI01000004_06325293_06337484 | NA | coding | downstream | 62155 | 6325012 ~ 6337484 (-) |
| CI01000004_06308316_06314451 | AMOTL2B | coding | downstream | 84634 | 6308266 ~ 6315005 (-) |
| CI01000004_06406371_06415282 | NA | coding | upstream | 2650 | 6406371 ~ 6416418 (-) |
| CI01000004_06419749_06423949 | BOKB | coding | upstream | 15466 | 6419187 ~ 6423987 (-) |
| CI01000004_06441871_06454719 | SEPT2 | coding | upstream | 37755 | 6441476 ~ 6455013 (-) |
| CI01000004_06470183_06483783 | HFM1 | coding | upstream | 66462 | 6470183 ~ 6483783 (-) |
| CI01000004_06497733_06501592 | LRRC8D, LRRC8DA | coding | upstream | 93984 | 6497705 ~ 6501592 (-) |
| G29208 | NA | non-coding | downstream | 101571 | 6285477 ~ 6298068 (-) |
| G29233 | NA | non-coding | downstream | 223739 | 6175696 ~ 6175900 (-) |
| G29172 | NA | non-coding | downstream | 354332 | 6044360 ~ 6045307 (-) |
| G29153 | NA | non-coding | downstream | 430510 | 5968478 ~ 5969129 (-) |
| G29132 | NA | non-coding | downstream | 556342 | 5839522 ~ 5843297 (-) |
| G29385 | NA | non-coding | upstream | 223853 | 6627574 ~ 6627791 (-) |
| G29386 | NA | non-coding | upstream | 224255 | 6627976 ~ 6628269 (-) |
| G29387 | NA | non-coding | upstream | 225345 | 6629066 ~ 6629470 (-) |
| G29391 | NA | non-coding | upstream | 251502 | 6655223 ~ 6656385 (-) |
| G29402 | NA | non-coding | upstream | 366641 | 6770362 ~ 6770583 (-) |
| CI01000004_05617072_05627369 | NA | other | downstream | 772125 | 5616644 ~ 5628289 (-) |
| G27746 | NA | other | downstream | 1195915 | 5178227 ~ 5203724 (-) |
| G26788 | NA | other | downstream | 3123918 | 3267683 ~ 3275721 (-) |
| CI01000004_01773383_01774888 | INSL5B | other | downstream | 4624698 | 1772928 ~ 1774942 (-) |
| CI01000004_06539836_06541252 | NA | other | upstream | 131106 | 6538904 ~ 6541252 (-) |
| G29388 | NA | other | upstream | 227572 | 6631293 ~ 6631907 (-) |
| G29656 | NA | other | upstream | 1560643 | 7964364 ~ 7965500 (-) |
| G29746 | NA | other | upstream | 1950777 | 8354498 ~ 8358127 (-) |
| G30316 | NA | other | upstream | 2974216 | 9377937 ~ 9406921 (-) |
