Gene
RNA
| Item | Value |
|---|---|
| gene id | G29391 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 6655223 ~ 6656385 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU33266 | True | 1163 | lncRNA | 0.42 | 1 | 6655223 | 6656385 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_06569673_06570071 | NA | coding | downstream | 85052 | 6569596 ~ 6570171 (-) |
| CI01000004_06555703_06558890 | HS2ST1, HS2ST1A, HS2ST | coding | downstream | 96333 | 6555477 ~ 6558890 (-) |
| CI01000004_06547877_06549227 | NA | coding | downstream | 105996 | 6547390 ~ 6549227 (-) |
| CI01000004_06539836_06541252 | NA | coding | downstream | 113971 | 6538904 ~ 6541252 (-) |
| CI01000004_06510788_06533217 | PKN2 | coding | downstream | 121841 | 6510400 ~ 6533382 (-) |
| CI01000004_06677179_06740196 | TOX | coding | upstream | 20794 | 6677179 ~ 6740196 (-) |
| CI01000004_06805399_06814604 | CAR8, CA8 | coding | upstream | 148832 | 6805217 ~ 6814604 (-) |
| CI01000004_06827636_06828127 | NA | coding | upstream | 171059 | 6827444 ~ 6828364 (-) |
| CI01000004_06915152_06921193 | FBXL7 | coding | upstream | 258204 | 6914589 ~ 6921193 (-) |
| CI01000004_06960750_06963258 | MPLKIP | coding | upstream | 304290 | 6959573 ~ 6963282 (-) |
| G29387 | NA | non-coding | downstream | 25753 | 6629066 ~ 6629470 (-) |
| G29386 | NA | non-coding | downstream | 26954 | 6627976 ~ 6628269 (-) |
| G29385 | NA | non-coding | downstream | 27432 | 6627574 ~ 6627791 (-) |
| G29188 | NA | non-coding | downstream | 251502 | 6399639 ~ 6403721 (-) |
| G29208 | NA | non-coding | downstream | 357155 | 6285477 ~ 6298068 (-) |
| G29402 | NA | non-coding | upstream | 113977 | 6770362 ~ 6770583 (-) |
| G29408 | NA | non-coding | upstream | 138937 | 6795322 ~ 6795621 (-) |
| G29411 | NA | non-coding | upstream | 147618 | 6804003 ~ 6804387 (-) |
| G29414 | NA | non-coding | upstream | 165582 | 6821967 ~ 6896950 (-) |
| G29388 | NA | other | downstream | 23316 | 6631293 ~ 6631907 (-) |
| CI01000004_05617072_05627369 | NA | other | downstream | 1027709 | 5616644 ~ 5628289 (-) |
| G27746 | NA | other | downstream | 1451499 | 5178227 ~ 5203724 (-) |
| G26788 | NA | other | downstream | 3379502 | 3267683 ~ 3275721 (-) |
| G29656 | NA | other | upstream | 1307979 | 7964364 ~ 7965500 (-) |
| G29746 | NA | other | upstream | 1698113 | 8354498 ~ 8358127 (-) |
| G30316 | NA | other | upstream | 2721552 | 9377937 ~ 9406921 (-) |
| G31203 | NA | other | upstream | 4090052 | 10746437 ~ 10750641 (-) |
| CI01000004_11407198_11412220 | ADCYAP1B, ADCYAP1 | other | upstream | 4751080 | 11406957 ~ 11412907 (-) |
