LOC122348911 (LOC107707953,LOC107707085)


Basic Information

Item Value
gene id LOC122348911
gene name LOC107707953,LOC107707085
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 2020260 ~ 2036466 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043244796.1
ATGGAAACACTGGTGACGTTCCTCCTCACTGGATCTCTGATACAAGTGTTTGACTCCAGCAGCCCTGACACTAAACTGTTCAAAGGAGAAATATTAGGCACTGCTACACAGAAAAACTGCAGCACACGCTTCGATAATGTCAATCAGAATCATAATGGATCATATTACTTCAGACTTGAAGATGATAAACTGAGGTATAGCTTCATAAATAATCCACTCTTACAAATTGTCGTCTCAGGATCTCCACCCAAACCCACATTGAGTGTCTTTAAGGATCAGCAGGAGGTGATGAAGATGGAGGAGGTGATGGAGGAAAGTTCATTGAGTCTGCGCTGCTCTACTAAGATCTTCTGTCCGTCTCGTCCTCCATCTCTCACGTGGACCTCGTCTCTCAATGAGAACATCACAGGACAGCAGTATcagagccaatcagagctcgTCTCTGATCTGAACTTCACTGTTTCTCACCGTCTTCACAAAGTCACTTTCACCTGCACCGCAACACACCAGCTACAGAGGAATATAACAACACAGCGCTCCCGTATGATACGAGTTCAGTATGCTCCTACAAACACATCAGTGAGGATAAACCCAGCTGGTTTAGTTCTGGAGGGTCgttcagtgactctgatctgcagcagtgatgCAAACCCAGCAGTGAACTACACCTGGTACAGAGACCCTGAAGAACTCCTGAATCCAGTTCAGACCGGACCAAACCTGACCCTCAACAACCCTGACCCTACAGACAGAGGACTATACTACTGTAGAGCTGACAACAAACACGGATCTCACAACACATCAGTGCTGCTGGACGTCCAGTatgCTCCTACAAACACATCAGTGAGGATAAACCCAGCTGGTTTAGTTCTGGAGGGTCgttcagtgactctgatctgcagcagtgatgCAAACCCAGCAGTGAACTACACCTGGTACAGAGACCCTGAAGAACTCCTGAATCCAGTTCAGACCGGACCAAACCTGACCCTCAACAACCCTGACCCTACAGACAGAGGACTATACTACTGTAGAGCTGACAACAAACACGGATCTCAGAACACATCAGTGCTGCTGGACGTCCACAGTGAACTACACCTGGTACAGAGACCTGAAGAACTCCTGAATCCAGTTCAGACCGGACCAAACCTGACCCTCAACAACCCTGACCCTACAGACAGAGGACTATACTACTGTAGAGCTGACAACAAACACGGATCTCAGAACACATCAGTGCTGCTGGACGTCCAGTatgCTCCTACAAACACATCAGTGAGGATAAACCCAGCTGGTTTAGTTCTGGAGGGTCgttcagtgactctgatctgcagcagtgatgCAAACCCAGCAGTGAACTACACCTGGTACAGAGACCCTGAAGAACTCCTGAATCCAGTTCAGACCGGACCAAACCTGACCCTCAACAACCCTGACCCTACAGACAGAGGACTATACTACTGTAGAGCTGACAACAAACACGGATCTCACAACACATCAGTGCTGCTGGACGTCCAGTatgCTCCAAAAAACACATCACTGTCGGCGTTTCCCTCCAGCTCAGTGATGGAGGGCAAACCAGTGACTCTGAACTGCAGGACTGATTCAAACCCAGCAGAGCTCAACTACACCTGGTACAGAGAGACTGGATCTCAATTTGAGTTCCTCCAAACTGGATATAATCACACCTACACTGTGACAAACCCTTCACACAACGCATGGTATGGCTGTAATGCTCAAAACCAGCATGGCCAATGCAATGCAACAGTCCAACTTGATGTTCAGTTTATGCCCAAAGTCAACAGCTCTTGTAGCAGAAACAGTGTAATGTCGTGTGTCTGTGAGGCTCATGGGAATCCCTGCCCTACACTAGAGTGGCGTCTGTCTGGACATGCGCTCACTAACTCTACAGAAACACCCATCAGTGAGGAGAAGTTAGGAAGCACAGGAGTGAAGAGCGTCCTGACCCTCCGTCAGTCCCTCTCAGACACAGACGTCCTGCAGTGTTTCAGCTCAAACGTTTACGGCAGCGCAAGTCAACAGTTTCAGCCCATCTCATCAACACAAGAAACAAGTTTCCATCCTCTGTCAGTGCTGCTCGGAGCCGCTGTCGGTGCGGCAGTGATGATAATCTTGTGCATCATGATGCTCTGCTATGAACGaagaaggaaagaaaaacctTCAGAATCCAGGCAAGACGACACGTCTGGACTCATTCTGACTCAAATAGCCGTTGCTCTGGATCATGACATTCAGTTTGTTCACGCCGATAACGGCATGCTGTCATCCACCGCACCGAGTGAACCACAATCTCTTCATTATTCCTCCATCGATTTCTCAAACACTGAAGCGCCGTCAGGAGAGATCAGGGGCATGGCCTCGCTGACCAGTGAATACGCTACGATCAGACACCGTCCTGAAGAAGCTGCAGACGCAGAGAACACCACAGAGCCCAAACAAGAAGAAGACATGACAGCAGAGATCACAGACACTTCTTCACCGGCATCAGAAGACGTGATTTATGGAAACATGAGCCATCACCACAGACAGAAGGAACCGCTGGTCACCGCAGATGATGCTGAAAAGATAGACTGAACCAAAGCCTTCAAATTTTTGCGCACCAGAAGAGACTGTTCATCCAAAAATGGCAATTACAAACCTAtagactttcttctgtggaacgtctgtttttatgttatgtttagtTTACCCTAAAAGACAAATTTCCTATTCATTTACTTACACGCAAGTCATCCGAGATGTACATGACTTTTTCTTCAGCAGAAcagtaaaaaagattttttacataaattctGCCCATTAAggattcataaaatgcaagttATCAGCTGAAGCCACATTGTGagtcaaaaaaagcacatacagGTAACACAACATTAAAGGAACATccatgttaatttatatatgctTGTTGTCCAAAGTAGATACAGTTCCCTAATTTTTAACCCCATTCTATCTGAAAGTGTGTAGACTATAGCCTTTGTCATATTTATTGCCTGCcaaattaacaaatgtaaatCTTTAAAGTATGACGCTTACTATATAGGTATATGGCAGACACAGACACCTTACATACAGACAGCAGTAATTTGATAAAATCCCTACTGCTTTCAGCTTCTGTCAGTATcctgggaaaaaaacacactggaTGGCTATTTACTTTACTTATTTAAGATGAACAGTAAAACAGAATTCAGAACATAAGAAGTATTACCATAATACAATGTTGACATATCTTATCAAGaagaaatgcatttca

Function

NR:

description
PREDICTED: myelin-associated glycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043244796.1 True 3277 mRNA 0.45 12 2020260 2036466

Neighbor

gene id symbol gene type direction distance location
LOC122349140 NA coding downstream 2912 2010868 ~ 2017348 (-)
LOC122348468 LOC107707987,LOC107555888,LOC107707097,LOC107662203,LOC107658968,LOC107590514 coding downstream 99218 1907473 ~ 1921042 (-)
LOC122349772 nudt4b,LOC107555891,LOC107662198,LOC107708005,LOC107576967,LOC101067274,LOC103028168,LOC108275142,LOC108438514 coding downstream 129489 1883030 ~ 1890771 (-)
badb LOC107749804,LOC107750664,LOC107691899,LOC107562077,LOC107588192,LOC107669205 coding downstream 505681 1512152 ~ 1514579 (-)
LOC122349649 majin coding downstream 510350 1506202 ~ 1509910 (-)
LOC122349155 tars,LOC107755726,LOC107680583,LOC107700064,LOC107727452,LOC108255896 coding upstream 159532 2195998 ~ 2207100 (-)
gas1a gas1a,LOC107680573,LOC107755728,LOC107557610,LOC107727450,LOC107558025,LOC107700065 coding upstream 308418 2344884 ~ 2346782 (-)
fbp2 LOC107557612,LOC107755732,LOC107680540,LOC107727448,LOC107700070,LOC107558028 coding upstream 462472 2498938 ~ 2504580 (-)
fbp1a fbp1a,f16p1,LOC107557613,LOC107700071,LOC108426201,LOC103033769,LOC107727435 coding upstream 469103 2505569 ~ 2510033 (-)
npffr2a npffr2a,LOC107697256,LOC107755724,LOC107719191,LOC107574064,LOC107700061,LOC103039748 coding upstream 747902 2784368 ~ 2798162 (-)
G49322 LOC107590516,LOC107658754,LOC107662226,LOC105896753 non-coding downstream 10341 1945761 ~ 2009919 (-)
G49243 NA non-coding downstream 317591 1701393 ~ 1702669 (-)
G49241 NA non-coding downstream 320624 1699306 ~ 1699636 (-)
G49239 NA non-coding downstream 321498 1698449 ~ 1698762 (-)
G49231 NA non-coding downstream 413177 1606871 ~ 1607083 (-)
G49340 NA non-coding upstream 20717 2057183 ~ 2058617 (-)
G49351 NA non-coding upstream 91977 2128443 ~ 2128870 (-)
LOC122349156 NA non-coding upstream 156543 2193009 ~ 2195812 (-)
G49403 NA non-coding upstream 271615 2308081 ~ 2315571 (-)
G49422 NA non-coding upstream 310389 2346855 ~ 2347199 (-)
LOC122348471 pwp1,LOC107658969,LOC105905702 other downstream 113098 1901590 ~ 1907162 (-)
G49309 LOC107658783,LOC107708003 other downstream 121434 1898083 ~ 1898826 (-)
G49133 LOC107691997,LOC107741482,LOC107563408,LOC107668708,LOC107588219 other downstream 799367 1169981 ~ 1220893 (-)
zgc:153151 NA other downstream 973943 1040922 ~ 1046317 (-)
zgc:162171 zgc:162171,LOC107588217,LOC107753986,LOC107742285,LOC107691949,LOC107668889,LOC103045050 other downstream 1131302 880586 ~ 888958 (-)
chst10 chst10 other upstream 1402283 3438749 ~ 3465586 (-)
LOC122348141 NA other upstream 2229802 4266268 ~ 4268884 (-)
trnar-ucu_8 NA other upstream 2247943 4284409 ~ 4284499 (-)
LOC122349098 NA other upstream 2316595 4353061 ~ 4360979 (-)
G50107 NA other upstream 2496580 4533046 ~ 4574002 (-)

Expression


Co-expression Network