LOC122349105 (LOC107740765,LOC107571598)


Basic Information

Item Value
gene id LOC122349105
gene name LOC107740765,LOC107571598
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 4374201 ~ 4377134 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043245033.1
ATGTTTCATtttgatATAATCTATCAAATCAGATATGGGTCTCTTTTCATCAGGACCATCGTGATCGGTTTCATAGCTGTTGTCAGGTCCCGGGCAGAATCAAACGTACAGGCGGAGGTTCAGTTAGTGTTTAGTCAAACGTCGACTGAACCGATCCCCACCAACAGCGACATTGTGGAGACTCTGAAAGAAGCAGCTGCTAATTCAACTGCAGGCTTCAACCTCACCATTGATGCCACTTCCATTACCGTCATTAaCTCAATGCAGATAATTCCACTAATAATCCTCACCAGTGGAACCTTTGATGCTGTTCTTTCCATTAAAAATTCTACTGAATTTAAGAGCAGGGCTTTGCTGATAAAAACAGGGCTTGAACCTTTTTTCCTGGCTGATTACCCTGCATCATTCAGTACCATAACTGTAACAAGCTTCAGTGATGGCGGTGTAAAATTGAAGAGTTTGCCCAAGATCCAAAACAGCATGGATGTTGTCTTTGGAGCAAACGCTGTTCTACCCAATAGCGCCCAGATAGTGAACACTGTAGTTCGAGCAGCCAGAAACAACACGTTACTCTTCCAGATCTTCACTTcttcaattataataaatggaACAGaatattcATCAGCTGAAGTCAGCAGCAGGATCAGTGTGTTGACCGCTTCATTCCTGGTTGTGGTGTCGCTTCTGGTTCCATGGTTTAACTGACCATAACACTCATGAGAAACAAGATTCAGATCTGTCTGAATCCGTTATCCTGACATGTCTTGATCAAACGAAGGACTCAACTTATTTCTGATGCTACTTAATGAGTAGTAAAACCTTAAATTAATCCTATTCTAAGCACTTTAAACTAGATCTAGTTCTTGATCTGTCTGTACCTATATCTGTATGTAATATAAACAGCTATATAAATTAAGGCAAAGATGTACCtgtatgttttcatatattcaGTTTACTTCTGAACCCATCATTGtgcatttatgttgtttttaatattggttaatggattattattattattattattattattattattattattattattattattgattgccagatctgttttattttgtaagaacattttttttaatgcaggagttttttaaatctaatgcTGAAATACTATGCTATTATTGATTCTTCAGAAAAGggataaaacatgcaaaaaagtacaaaataaactcatgaaataaaacattttcaattctATTAAAATGATGATAACTTATAA

Function

NR:

description
PREDICTED: mucin-5AC-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043245033.1 True 1240 mRNA 0.36 7 4374201 4377134

Neighbor

gene id symbol gene type direction distance location
LOC122349213 LOC107740765,LOC107665753,LOC107571598,LOC107748032 coding downstream 28382 4343102 ~ 4345819 (-)
LOC122349101 LOC107670400,LOC107665746 coding downstream 42432 4326166 ~ 4331769 (-)
dctn1a dctn1a,LOC107665752,LOC107748035,LOC108260758 coding downstream 56481 4296640 ~ 4317720 (-)
LOC122349601 alpk1,LOC107572659 coding downstream 179720 4186569 ~ 4194481 (-)
LOC122349599 LOC107740753 coding downstream 187808 4183344 ~ 4186393 (-)
LOC122349112 NA coding upstream 9404 4386538 ~ 4395999 (-)
LOC122349212 LOC107572454,LOC107670399,LOC107740765,LOC107571598,LOC107665753,LOC107748032 coding upstream 21136 4398270 ~ 4405088 (-)
LOC122349116 NA coding upstream 28457 4405591 ~ 4409854 (-)
si:cabz01085394.1 NA coding upstream 33221 4410355 ~ 4414884 (-)
LOC122349120 LOC107670396,LOC107574008 coding upstream 79251 4456385 ~ 4477290 (-)
G50091 NA non-coding downstream 4434 4364660 ~ 4369767 (-)
G49966 NA non-coding downstream 52495 4321139 ~ 4321706 (-)
G49934 NA non-coding downstream 79650 4293047 ~ 4294551 (-)
G49961 NA non-coding downstream 84124 4288303 ~ 4290077 (-)
G49926 NA non-coding downstream 238780 4091025 ~ 4135421 (-)
LOC122349221 NA non-coding upstream 42339 4419473 ~ 4420476 (-)
G50092 NA non-coding upstream 46889 4424023 ~ 4430283 (-)
G50093 LOC107572452,LOC107656764,LOC107574007,LOC105895407,LOC106608490 non-coding upstream 62315 4439449 ~ 4441606 (-)
G50100 NA non-coding upstream 69165 4446299 ~ 4446738 (-)
G50101 NA non-coding upstream 69701 4446835 ~ 4447755 (-)
LOC122349098 NA other downstream 13222 4353061 ~ 4360979 (-)
trnar-ucu_8 NA other downstream 89702 4284409 ~ 4284499 (-)
LOC122348141 NA other downstream 105317 4266268 ~ 4268884 (-)
chst10 chst10 other downstream 908615 3438749 ~ 3465586 (-)
LOC122348471 pwp1,LOC107658969,LOC105905702 other downstream 2467039 1901590 ~ 1907162 (-)
G50107 NA other upstream 155912 4533046 ~ 4574002 (-)
LOC122349182 lpcat4,LOC107698138,LOC107574180,LOC107720499 other upstream 648811 5025945 ~ 5029603 (-)
G50246 NA other upstream 996259 5373393 ~ 5375111 (-)
LOC122349598 NA other upstream 1039796 5416930 ~ 5420353 (-)
G50305 NA other upstream 1287678 5664812 ~ 5665720 (-)

Expression


Co-expression Network