LOC122349155 (tars,LOC107755726,LOC107680583,LOC107700064,LOC107727452,LOC108255896)


Basic Information

Item Value
gene id LOC122349155
gene name tars,LOC107755726,LOC107680583,LOC107700064,LOC107727452,LOC108255896
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 2195998 ~ 2207100 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043245100.1
TTGCATCAGCATTGCCTCCCCGCGATATCCGGGAAACGTGTGTGCCGGTGTCCTGAATAAAGACTGTGAAAATCTGCGTTGGGTCGTGTTACTGTGTTGGATCGTGcttgtgatatttttgtctGATTATGGCGGATGAGAGCGTTACCGAACAGCTGAAGGACCTGAAAATGGACGAGAAGAAGAATAGCAAAGACggaggaaagaagaaaaacaagaatgCTGGTGGAGATGCTGGTGGCAGGGCTGAGTTGAATCCTCTACCAGAGTACATCGATGAGCGTCTCTCCATTTATAGCAAGCTGAAGGCAGAACATGATGCCCTGCTGTCAGATAAAGCAGCAAAAGACAGCAAGCCCATCAAGATCACACTTCCTGATGGAAAAGTAGTAGATGGGGAATCCTGGAAGACCACACCTTACCAGGTTGCCTGTGGGATCAGCCAAGGCCTTGCTGATAACACTGTGATCTCCAAAGTGAACAATGTGGTATGGGATCTAGACAGGCCCTTAGAGGAAGACTGCAGTCTAGTGTTTCTCAAATTCGATGATGAAGAGGCACAAGCAGTGTATTGGCACTCCAGTGCCCACATAATGGGAGAGGCCATGGAGCGAGTCTATGGAGGATGCCTTTGTTATGGACCTCCCATTGAGAATGGCTTTTACTATGATATGTTTCTTGAAAATGAAGGTGTATCGAGTAATGATTTTCCCTGTTTGGAGACCTTGTGTAAGAAGATCATCAAAGAAAAGCAGCCCTTTGAGAGGCTGGAGGTAAAGAAGGAGACTCTGTTGGAGATGTTCAAGTACAACAAGTTCAAGTGCAGGATCCTAAATGAAAAGGTTACCACCCCAACAACTACAGTTTACAGGTGTGGACCTTTGATTGATCTGTGCAGAGGGCCTCATGTGAGACACACAGGAAAGATCAAGGCCTTGAAGATCCACAAGAACTCTTCTACGTATTGGGAGGGCAAAGCTGACATGGAGAGCCTCCAAAGGATCTATGGCATCTCTTTCCCTGATCCTAAAATGCTGAAAGAATGGGAGAAATTTCAGGAAGAAGCCAAAAACAGGGATCACCGCAAACTAGGAAGGGAGCAAGACTTGTTTTTCTTCCACGACCTGAGCCCGGGTAGCTGTTTCTTTCTGCCTAAAGGAGCCTACATCTATAATACGCTGATCGAGTTTATTAGAAGTGAATATAGAAAGAGGGGATTCCAGGAAGTGGTCACACCCAACATCTACAACAGCAAACTATGGCAAACCTCAGGACACTGGCAGCACTACAGCGAAAACATGTTCTCCTTTGAGGTGGAAAAGGAGATCTTTGCTCTCAAGCCCATGAACTGCCCTGGACACTGTCTGATGTTTGATCACCGGCCTCGCTCTTGGAGAGAACTGCCTTTGCGTTTGGCTGATTTTGGGGTCTTGCACCGTAACGAGTTGTCTGGAGCTCTTACAGGCCTGACCAGGGTCAGACGTTTCCAACAAGATGACGCACACATCTTCTGCTCTATGGACCAGATTGAGTCTGAGATAAAGGGTTGCCTGAACTTCCTACGCACCGTGTATGACGTGTTTGGCTTTACCTTCAAATTGAACCTTTCCACCAGGCCAGAGAAGTTCCTAGGAGAACCCGAAGTGTGGGACCAGGCCGAGAAGcAACTGGAGAACAGCCTGAATGATTTTGGAGAGAAATGGGTTCTGAATCCTGGTGATGGAGCTTTTTATGGACCAAAGATTGATATTCAGATAAAGGACGCCATCGGCAGGTATCACCAGTGTGCCACCATTCAGCTGGACTTCCAGTTGCCTATTCGCTTCAATCTTACTTTTGTGAGcCATGATGGCGATGACAAGAAGAGACCTGTGATCATCCACAGAGCAATCCTGGGTTCAGTGGAGCGCATGATCGCCATCCTGACTGAAAACTACGGGGGAAAGTGGCCACTGTGGCTGTCCCCACGACAGGTGATGGTGGTTCCTGTAGGACCCACTTGTGATGAGTACGCCCAGAGAGTACGTACAAAAAGGAGTTCCACAGGGAGGTTGATGACGGATGTGGATCTGGACCCAGGCTGCACCCTGAACAAGAAGATCAGGAATGCTCAGTTGGCTCAGTACAATTTCATTTTAGTGGTGGGTGAGAAGGAGAAGACCAGTGACACGGTAAATGTTAGAACTCGTGACAACAAGGTGCACGGGGAGAGGAGTCTGACAGACTGCATGGAGAGACTCAAGGAGCTGAAGGCCTCAAGATCCCGGAACGCAGAAGAGGAATTCTGAACTCCCTTAACATCCTTCCAAGTCTTCCTTCATATGCCATATGCTCAGATGCTACTGGGCAGCAACATGCTGCTATTCTGCATTGATGATCCATAACTTCTCAACCGAATCTACTTGGTTCAGGGGCTCAGGTTTTAAAtcagtgacatttattttataactaatCATTCAATTATCCACAAGTCTGAAGTCTCACATcagttgctttaaaaaaaatattttgggaaTGACGGATATCCATTATGCTTTGTTAGAGGAAAAAGGGTCTTTTCTGTCAATATATGAATGGACAAAAATTACAGTTTCTGGTAGCTTGTGTTGTTGGggataaaataaaacgttatgTCTTTCA

Function

symbol description
tars Enables threonine-tRNA ligase activity. Involved in threonyl-tRNA aminoacylation. Located in cytoplasm. Is expressed in several structures, including alimentary system; brain; integumental system; liver; and sensory organ. Human ortholog(s) of this gene implicated in nonphotosensitive trichothiodystrophy 7. Orthologous to human TARS1 (threonyl-tRNA synthetase 1).

NR:

description
PREDICTED: threonine--tRNA ligase, cytoplasmic isoform X1

GO:

id name namespace
GO:0006435 threonyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004829 threonine-tRNA ligase activity molecular_function

KEGG:

id description
K01868 TARS, thrS; threonyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043245100.1 True 2640 mRNA 0.46 20 2195998 2207100

Neighbor

gene id symbol gene type direction distance location
LOC122348911 LOC107707953,LOC107707085 coding downstream 159532 2020260 ~ 2036466 (-)
LOC122349140 NA coding downstream 178650 2010868 ~ 2017348 (-)
LOC122348468 LOC107707987,LOC107555888,LOC107707097,LOC107662203,LOC107658968,LOC107590514 coding downstream 274956 1907473 ~ 1921042 (-)
LOC122349772 nudt4b,LOC107555891,LOC107662198,LOC107708005,LOC107576967,LOC101067274,LOC103028168,LOC108275142,LOC108438514 coding downstream 305227 1883030 ~ 1890771 (-)
badb LOC107749804,LOC107750664,LOC107691899,LOC107562077,LOC107588192,LOC107669205 coding downstream 681419 1512152 ~ 1514579 (-)
gas1a gas1a,LOC107680573,LOC107755728,LOC107557610,LOC107727450,LOC107558025,LOC107700065 coding upstream 137784 2344884 ~ 2346782 (-)
fbp2 LOC107557612,LOC107755732,LOC107680540,LOC107727448,LOC107700070,LOC107558028 coding upstream 291838 2498938 ~ 2504580 (-)
fbp1a fbp1a,f16p1,LOC107557613,LOC107700071,LOC108426201,LOC103033769,LOC107727435 coding upstream 298469 2505569 ~ 2510033 (-)
npffr2a npffr2a,LOC107697256,LOC107755724,LOC107719191,LOC107574064,LOC107700061,LOC103039748 coding upstream 577268 2784368 ~ 2798162 (-)
slc4a4a slc4a4,LOC107755741,LOC107700079,LOC107747688,LOC107685251 coding upstream 624726 2831826 ~ 2881239 (-)
LOC122349156 NA non-coding downstream 186 2193009 ~ 2195812 (-)
G49351 NA non-coding downstream 67128 2128443 ~ 2128870 (-)
G49340 NA non-coding downstream 137381 2057183 ~ 2058617 (-)
G49332 NA non-coding downstream 161827 2032127 ~ 2034171 (-)
G49322 LOC107590516,LOC107658754,LOC107662226,LOC105896753 non-coding downstream 186079 1945761 ~ 2009919 (-)
G49403 NA non-coding upstream 100981 2308081 ~ 2315571 (-)
G49422 NA non-coding upstream 139755 2346855 ~ 2347199 (-)
G49423 NA non-coding upstream 157707 2364807 ~ 2365090 (-)
G49424 NA non-coding upstream 159293 2366393 ~ 2466286 (-)
LOC122349160 NA non-coding upstream 204571 2411671 ~ 2465062 (-)
LOC122348471 pwp1,LOC107658969,LOC105905702 other downstream 288836 1901590 ~ 1907162 (-)
G49309 LOC107658783,LOC107708003 other downstream 297172 1898083 ~ 1898826 (-)
G49133 LOC107691997,LOC107741482,LOC107563408,LOC107668708,LOC107588219 other downstream 975105 1169981 ~ 1220893 (-)
zgc:153151 NA other downstream 1149681 1040922 ~ 1046317 (-)
zgc:162171 zgc:162171,LOC107588217,LOC107753986,LOC107742285,LOC107691949,LOC107668889,LOC103045050 other downstream 1307040 880586 ~ 888958 (-)
chst10 chst10 other upstream 1231649 3438749 ~ 3465586 (-)
LOC122348141 NA other upstream 2059168 4266268 ~ 4268884 (-)
trnar-ucu_8 NA other upstream 2077309 4284409 ~ 4284499 (-)
LOC122349098 NA other upstream 2145961 4353061 ~ 4360979 (-)
G50107 NA other upstream 2325946 4533046 ~ 4574002 (-)

Expression


Co-expression Network