LOC122349396 (LOC107563097,LOC107741473)


Basic Information

Item Value
gene id LOC122349396
gene name LOC107563097,LOC107741473
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 1374479 ~ 1380091 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043245421.1
ACGAATTATAaattggtgtgtttttttgaatTGTAACTCGTTCGGCGTTTTAGTTTCCGTGTAACATTATCAATACGTTTCGTTCCTGGCTCCTTGCGGACGGGGCCGTTCGACCGACTGGGTACCGTTTCTTTGTTGTAAAACCTATTTATTCGTCTTGGTGTTCCCCTGAAAGAGCTGTTTATTAACCATGAAAAAGCGATTGGTTTCATTATCAATAACTGATATCTGTAATATAAATggtgtatatttgtattatatgcaaaaaaaaaaaaaaaaagttgtagcGGGTGTGTCTCGCCTGCTTGAGGAAAAAAACCCCGTTTAGTCTTGACTGACAGCGCTCTTCCGTCAAACGGCTTCCGTCCCGAACAGAACCGATGCGCTGGACTCAGGTGCAGAACAGAATCTTCAGGATGGCGAGCACCCAGCAATCTGCACAGGAATTCCTGGGAAATGGACGCAATCTGCTAACTGGATCTCATTTAAACTGCGATCCTGTAATTGAAGCCTTAGACCAGTGCAGATTCATCAAAACTGAAGAGcttaatttaattcaatctgCAGAAATTATCCAGGAGAAGATAAAGATTATGCTTGACCTAGTTATTTCCAAAGGTGAAGAAGCATGCtataagtttttaaaaattcttgACAAGAACAGATTTCAAGTATTTCCAAGATCTGGTTTGGTTACTCCAGATTTACACCACTGGATTAGTTGCTTCTCCTTCCAGGAAGAACCACAATCTCAGACAGCAAACAAAGCAGATTCAGATCCTTGTACTACATACCAGGGCCTTTTGAGATGGAAAGCAAGACAAATACTGGATGAAAAATGGAACCAAAGcatgaatttcttaaaaaatgagcaaaaaagaaaaccctTCATGTACGTACCCCTTGTTATGGACACAGATTCTAGTACAGTTGCAAAGCTTAAGAAGATCAAGGGATGCAAGAAATCTCGTTCAAAGAAACTGAAGACCTACATTCCAACAGCCAAGAAAATGCTGTCTCCCAAAGACTTGCTAACGAATGATGAGAAAAGCATCCTGCTTGTGGGAAAACCTGGAGTGGGAAAAACAACAGTTGCACTAGAGATACTTAGACTTTggacagaagagaaaaacattCCACAGTGCATCGGAATATTGACCTGGACCTCACAGACTGTAGCATTGCTGACCCCGGCTTGAAACTTCTTCTAAGCTCATTGAAAAATTTGAAATTTCTCAGGTCAACAAGCACATTGAAA
>XM_043245423.1
ACGAATTATAaattggtgtgtttttttgaatTGTAACTCGTTCGGCGTTTTAGTTTCCGTGTAACATTATCAATACGTTTCGTTCCTGGCTCCTTGCGGACGGGGCCGTTCGACCGACTGGGTACCGTTTCTTTGTTGTAAAACCTATTTATTCGTCTTGGTGTTCCCCTGAAAGAGCTGTTTATTAACCATGAAAAAGCGATTGGTTTCATTATCAATAACTGATATCTGTAATATAAATggtgtatatttgtattatatgcaaaaaaaaaaaaaaaaagttgtagcGGGTGTGTCTCGCCTGCTTGAGGAAAAAAACCCCGTTTAGTCTTGACTGACAGCGCTCTTCCGTCAAACGGCTTCCGTCCCGAACAGAACCGATGCGCTGGACTCAGGTGCAGAACAGAATCTTCAGGATGGCGAGCACCCAGCAATCTGCACAGGAATTCCTGGGAAATGGACGCAATCTGCTAACTGGATCTCATTTAAACTGCGATCCTGTAATTGAAGCCTTAGACCAGTGCAGATTCATCAAAACTGAAGAGcttaatttaattcaatctgCAGAAATTATCCAGGAGAAGATAAAGATTATGCTTGACCTAGTTATTTCCAAAGGTGAAGAAGCATGCtataagtttttaaaaattcttgACAAGAACAGATTTCAAGTATTTCCAAGATCTGGTTTGGTTACTCCAGATTTACACCACTGGATTAGTTGCTTCTCCTTCCAGGAAGAACCACAATCTCAGACAGCAAACAAAGCAGATTCAGATCCTTGTACTACATACCAGGGCCTTTTGAGATGGAAAGCAAGACAAATACTGGATGAAAAATGGAACCAAAGcatgaatttcttaaaaaatgagcaaaaaagaaaaccctTCATGTACGTACCCCTTGTTATGGACACAGATTCTAGTACAGTTGCAAAGCTTAAGAAGATCAAGGGATGCAAGAAATCTCGTTCAAAGAAACTGAAGACCTACATTCCAACAGCCAAGAAAATGCTGTCTCCCAAAGACTTGCTAACGAATGATGAGAAAAGCATCCTGCTTGTGGGAAAACCTGGAGTGGGAAAAACAACAGTTGCACTAGAGATACTTAGACTTTggacagaagagaaaaacattCCATGCATCGGAATATTGACCTGGACCTCACAGACTGTAGCATTGCTGACCCCGGCTTGAAACTTCTTCTAAGCTCATTGAAAAATTTGAAATTTCTCAGGTCAACAAGCACATTGA

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 12-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043245421.1 True 1258 mRNA 0.40 5 1374479 1380091
XM_043245423.1 False 1253 mRNA 0.40 5 1374481 1380091

Neighbor

gene id symbol gene type direction distance location
LOC122349395 LOC107691994,LOC107749836,LOC107575807,LOC107741479,LOC107563369 coding downstream 583 1366838 ~ 1373896 (-)
fam113 LOC107741458,LOC107691916 coding downstream 8164 1363255 ~ 1366315 (-)
otub1b otub1b,LOC107588177,LOC107668564,LOC107691913,LOC107562237 coding downstream 12614 1357913 ~ 1361865 (-)
cmtr2 cmtr2,LOC107588175,LOC107691918,LOC107749817 coding downstream 59329 1310276 ~ 1315150 (-)
calb2b calb2b,LOC107563379,LOC107691995,LOC107668624,LOC107749837,LOC107741475 coding downstream 68827 1297148 ~ 1305652 (-)
adad2 LOC107588220,LOC107749835,LOC107668536 coding upstream 2044 1382135 ~ 1386182 (-)
rcor2 rcor2,LOC107691911,LOC107750597,LOC107588183,LOC107562174,LOC107668449,LOC107749809 coding upstream 59023 1439114 ~ 1447857 (-)
arl2 arl2,LOC107588185,LOC107668402,LOC107749806 coding upstream 93266 1473357 ~ 1475372 (-)
gpha2 gpha2,LOC107749831,LOC107588222,LOC107668374 coding upstream 121148 1501239 ~ 1504037 (-)
LOC122349649 majin coding upstream 126111 1506202 ~ 1509910 (-)
G49023 NA non-coding downstream 295287 1078963 ~ 1079192 (-)
G49011 NA non-coding downstream 377980 996084 ~ 996499 (-)
G49004 NA non-coding downstream 391717 982339 ~ 982762 (-)
G48985 NA non-coding downstream 427317 946464 ~ 947162 (-)
G48936 syt4,LOC107562593,LOC107742284,LOC107691948,LOC107588142,LOC107668880,LOC107753936 non-coding downstream 470579 899143 ~ 903900 (-)
G49186 LOC107691905,LOC107562132,LOC107750593,LOC107668381,LOC107588184 non-coding upstream 85098 1465189 ~ 1468013 (-)
G49210 NA non-coding upstream 117232 1497323 ~ 1517408 (-)
G49231 NA non-coding upstream 226780 1606871 ~ 1607083 (-)
G49239 NA non-coding upstream 318358 1698449 ~ 1698762 (-)
G49241 NA non-coding upstream 319215 1699306 ~ 1699636 (-)
G49133 LOC107691997,LOC107741482,LOC107563408,LOC107668708,LOC107588219 other downstream 153586 1169981 ~ 1220893 (-)
zgc:153151 NA other downstream 328162 1040922 ~ 1046317 (-)
zgc:162171 zgc:162171,LOC107588217,LOC107753986,LOC107742285,LOC107691949,LOC107668889,LOC103045050 other downstream 485521 880586 ~ 888958 (-)
LOC122348397 zgc:92429,LOC107588137,LOC107753943,LOC107668941,LOC103044742,LOC108434854,LOC108267498 other downstream 544809 819637 ~ 829670 (-)
G48823 LOC107667730 other downstream 1099981 270369 ~ 274498 (-)
G49309 LOC107658783,LOC107708003 other upstream 517992 1898083 ~ 1898826 (-)
LOC122348471 pwp1,LOC107658969,LOC105905702 other upstream 521499 1901590 ~ 1907162 (-)
chst10 chst10 other upstream 2058658 3438749 ~ 3465586 (-)
LOC122348141 NA other upstream 2886177 4266268 ~ 4268884 (-)
trnar-ucu_8 NA other upstream 2904318 4284409 ~ 4284499 (-)

Expression


Co-expression Network