tifa (tifab,LOC107742334,LOC107692005,LOC107659708,LOC107753989,LOC107588127)


Basic Information

Item Value
gene id tifa
gene name tifab,LOC107742334,LOC107692005,LOC107659708,LOC107753989,LOC107588127
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 283333 ~ 285000 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043245958.1
CAGTCATGTTTATATCTGGTCATTGAAGAGAGGTAACATCACAAGACGACCTGGCGAGTGCTTTACGTTTTCAGCTAACGTTCAACCGCTCAACAAAGGGCATTTCTTTTTCGTCAAAACGAGAATAAAGCGCGCCCGTCGTCTCCGGGTCAAATATAGAacgaattacatttttgaaataagaCTATAATACGAAACAAATAGCGAAAGTGTGGAAGTCGGTTGCGCAACTCTGGAGTTTTTGAGAGTCACATGTTCCCAGCTGGAGGGGGATTTCGGTGCTTCTGATGCAATTCCCTTTGTTGAGCTCATAGTATAGCGATCCCGGCTTCAGGACAGCAGTCCGTTAGTTCATGATCGTTGCAAACAACTTTTGAAGGTTTAACTGTAAACAAGTTGATTCAGCACCACGGAAGTTGCGTTATATTTCGCAGAATGAACGACAATAGCAAACTCGAGACCGAAGAACTGCTTACTTGCCTTCATGTCCATCTCTTCCACCCTAACCAAGCCAGCCGTCCACTCTTCCACAACCTGCCCCTAAATCAGCCGTACAAAATGGAGGCTGAAGACCCACTAAGGCTCGGCCGCGACGGACAGACCTGCATCTTCGCCCTGAACGACACCTCTGTTTCCAGAAAACAGCTCTCCGTACAGGCTCATAAGAAAGCTGGCAGCCCGTGCTTGAGCTTCACGATCCAGAACATGAGCCAGAAGGTCAAGCTAATGGTTGGCGGGTCCGAACTGAGGTACCTCGAAAAGGCTGAGCTTGACGATAAGGTGCTCTGCCGCTTTGGAAGATACGAGCTGCTGATTTGGCAGGAACCAGGAGATTGCGAGAATAAGTTTGAGGTCCTGTTTGAAACATGCAATGCACCTCCTTCGCAGGAATCGGGCACAGATGTGCCATGCAAACCTCCTGTTATGGATACCAACATGCCGTGGAGAAACTTTGAGAATGGAGCGCCAGTAAGCCAAGAGCCGCTGGAGTCAGATGAGACAGTTGTTTTAGTGTAGATATTTTTTTGGACATTGCTCTGCGAGGAATCAGACTGATCAGAATCTGTGTTTAATTACTGTTGTTGTCGATACTGTGTGTTATGAAAGCACTCAGCATGTCTTTAACGTTTAAACCTCAGAAGTGACCCTACTAAGTGACCTACTAACATTTCTTCTGGAATGTCACTGAACCAGTTTTGTTGCCTATACCGTGTCTTTGTGTTCCTTCTTTTGTAcagatattttattacatattttactgGGATTATCGTCACACACGTGCTTTCTCTTAATCATTGTGTGTGTTCCTTGCATAAGTGCCTTTGGccgttgtttttataaataatatttttattgcattgtattattttatatcgaCTGTTACTTGACAGAACACGAATCATaagcttttgaaaaatgtgaaatgactGTGATTGAAGGGTTATTCGTTCTACTGTCATGTTAtctcatataataaaataaaatgttcatattta

Function

symbol description
tifab Involved in several processes, including animal organ morphogenesis; cranial nerve development; and hard palate morphogenesis.

NR:

description
TRAF-interacting protein with FHA domain-containing protein A-like

GO: NA

KEGG:

id description
K23826 TIFA; TRAF-interacting protein with FHA domain-containing protein A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043245958.1 True 1496 mRNA 0.43 2 283333 285000

Neighbor

gene id symbol gene type direction distance location
trnan-guu_33 NA coding downstream 2478 280782 ~ 280855 (-)
LOC122349836 NA coding downstream 259630 23604 ~ 23703 (-)
LOC122348751 sh2b3,LOC107594562,LOC107550292 coding downstream 268259 8263 ~ 15074 (-)
tnfsf10l LOC107691962,LOC107562848,LOC107742295,LOC107701536,LOC107753950,LOC108410411,LOC103041464 coding upstream 54825 339825 ~ 358332 (-)
si:dkey-171c9.3 LOC107692004,LOC107742319 coding upstream 77023 362023 ~ 367395 (-)
gpr185b gpr185b,LOC107669001,LOC107562838,LOC107588216,LOC107742332,LOC107691958,LOC108267436 coding upstream 261103 546103 ~ 553394 (-)
si:dkey-172j4.3 si:dkey-172j4.3,LOC107753941,LOC107742290,LOC107562901,LOC107588135,LOC107668950,LOC107691954 coding upstream 378675 663675 ~ 716212 (-)
si:ch211-200p22.4 si:ch211-200p22.4,LOC107562624,LOC107742289,LOC107691953,LOC107668925,LOC107588138 coding upstream 544913 829913 ~ 879559 (-)
G48824 NA non-coding downstream 2984 279484 ~ 280349 (-)
G48808 NA non-coding downstream 26548 256547 ~ 256785 (-)
G48802 NA non-coding downstream 41786 239294 ~ 241547 (-)
G48781 NA non-coding downstream 45156 194136 ~ 238177 (-)
G48817 rbm4.3,LOC107742300,LOC107562822 non-coding upstream 2255 287255 ~ 308325 (-)
G48816 LOC107742299 non-coding upstream 6855 291855 ~ 294469 (-)
G48825 NA non-coding upstream 24044 309044 ~ 336585 (-)
G48895 NA non-coding upstream 251102 536102 ~ 579489 (-)
LOC122348399 NA non-coding upstream 345786 630786 ~ 634062 (-)
G48823 LOC107667730 other downstream 8835 270369 ~ 274498 (-)
si:dkey-112a7.4 si:dkey-112a7.4 other downstream 69648 211341 ~ 213685 (-)
LOC122348397 zgc:92429,LOC107588137,LOC107753943,LOC107668941,LOC103044742,LOC108434854,LOC108267498 other upstream 534637 819637 ~ 829670 (-)
zgc:162171 zgc:162171,LOC107588217,LOC107753986,LOC107742285,LOC107691949,LOC107668889,LOC103045050 other upstream 595586 880586 ~ 888958 (-)
zgc:153151 NA other upstream 755922 1040922 ~ 1046317 (-)
G49133 LOC107691997,LOC107741482,LOC107563408,LOC107668708,LOC107588219 other upstream 884981 1169981 ~ 1220893 (-)
G49309 LOC107658783,LOC107708003 other upstream 1613083 1898083 ~ 1898826 (-)

Expression


Co-expression Network