LOC122349160


Basic Information

Item Value
gene id LOC122349160
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 2411671 ~ 2465062 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251428.1
AGGCCAAGCGGCTCGTAGTTCACCACTTCTGGAGCTGTAAACCACAAAACAACATCACTAACAATACAGAAGAGTTTGGGACTGCTGTATCATCACTGCCTGCAGACACACTGGCTGCCATTCAGTGGTGTCCCCCTCCTTCGATCTACCTATATTTGGGATCCCTTGACTTGCAGGAATGTTCTGGCCCATGATGTTACAACAAACATCATCTCCTGCAGATCGCCCTGAGAAGTAATTTATGACACTGCAAACTGAATCGCAACCGGTGAACTGTTTCAAGAGACGCATG

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251428.1 True 292 lncRNA 0.48 3 2411671 2465062

Neighbor

gene id symbol gene type direction distance location
gas1a gas1a,LOC107680573,LOC107755728,LOC107557610,LOC107727450,LOC107558025,LOC107700065 coding downstream 64889 2344884 ~ 2346782 (-)
LOC122349155 tars,LOC107755726,LOC107680583,LOC107700064,LOC107727452,LOC108255896 coding downstream 204571 2195998 ~ 2207100 (-)
LOC122348911 LOC107707953,LOC107707085 coding downstream 375205 2020260 ~ 2036466 (-)
LOC122349140 NA coding downstream 394323 2010868 ~ 2017348 (-)
LOC122348468 LOC107707987,LOC107555888,LOC107707097,LOC107662203,LOC107658968,LOC107590514 coding downstream 490629 1907473 ~ 1921042 (-)
fbp2 LOC107557612,LOC107755732,LOC107680540,LOC107727448,LOC107700070,LOC107558028 coding upstream 33876 2498938 ~ 2504580 (-)
fbp1a fbp1a,f16p1,LOC107557613,LOC107700071,LOC108426201,LOC103033769,LOC107727435 coding upstream 40507 2505569 ~ 2510033 (-)
npffr2a npffr2a,LOC107697256,LOC107755724,LOC107719191,LOC107574064,LOC107700061,LOC103039748 coding upstream 319306 2784368 ~ 2798162 (-)
slc4a4a slc4a4,LOC107755741,LOC107700079,LOC107747688,LOC107685251 coding upstream 366764 2831826 ~ 2881239 (-)
ifngr2 NA coding upstream 420197 2885259 ~ 2888147 (-)
G49423 NA non-coding downstream 46581 2364807 ~ 2365090 (-)
G49422 NA non-coding downstream 64472 2346855 ~ 2347199 (-)
G49403 NA non-coding downstream 96100 2308081 ~ 2315571 (-)
LOC122349156 NA non-coding downstream 215859 2193009 ~ 2195812 (-)
G49351 NA non-coding downstream 282801 2128443 ~ 2128870 (-)
G49444 NA non-coding upstream 19482 2484544 ~ 2485199 (-)
G49447 dapk1,LOC107680553,LOC107755715,LOC107557602,LOC107700066,LOC107558027 non-coding upstream 23948 2489010 ~ 2491915 (-)
G49440 ctsla,LOC107755730,LOC107680563,LOC107557611,LOC107558029,LOC107727441 non-coding upstream 28953 2494015 ~ 2497899 (-)
G49450 NA non-coding upstream 46494 2511556 ~ 2522869 (-)
G49453 NA non-coding upstream 68160 2533222 ~ 2533643 (-)
LOC122348471 pwp1,LOC107658969,LOC105905702 other downstream 504509 1901590 ~ 1907162 (-)
G49309 LOC107658783,LOC107708003 other downstream 512845 1898083 ~ 1898826 (-)
G49133 LOC107691997,LOC107741482,LOC107563408,LOC107668708,LOC107588219 other downstream 1190778 1169981 ~ 1220893 (-)
zgc:153151 NA other downstream 1365354 1040922 ~ 1046317 (-)
zgc:162171 zgc:162171,LOC107588217,LOC107753986,LOC107742285,LOC107691949,LOC107668889,LOC103045050 other downstream 1522713 880586 ~ 888958 (-)
chst10 chst10 other upstream 973687 3438749 ~ 3465586 (-)
LOC122348141 NA other upstream 1801206 4266268 ~ 4268884 (-)
trnar-ucu_8 NA other upstream 1819347 4284409 ~ 4284499 (-)
LOC122349098 NA other upstream 1887999 4353061 ~ 4360979 (-)
G50107 NA other upstream 2067984 4533046 ~ 4574002 (-)

Expression


Co-expression Network