Fish Transcriptome and Expression Database

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ornamental fish

LOC122349836

Basic Information

Item	Value
gene id	LOC122349836
gene name	NA
gene type	coding
species	tiger barb (Puntius tetrazona)
category of species	ornamental fish

Chromosome Information

Item	Value
chromosome id	NC_056705.1
NCBI id	CM032074.1
chromosome length	41700998
location	23604 ~ 23703 (-)
genome version	ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251529.1
TTCCAGTGATGAGCCAGCCATGCTAATACTGATGCACCAGGCTGTCTGGGTGTAAGTGAGTTAACTTATCTTCTCACACTTGCAGTGTGCTCTGAGGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
XR_006251529.1	True	100	snoRNA	0.47	1	23604	23703

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
LOC122348751	sh2b3,LOC107594562,LOC107550292	coding	downstream	8530	8263 ~ 15074 (-)
trnan-guu_33	NA	coding	upstream	257079	280782 ~ 280855 (-)
tifa	tifab,LOC107742334,LOC107692005,LOC107659708,LOC107753989,LOC107588127	coding	upstream	259630	283333 ~ 285000 (-)
tnfsf10l	LOC107691962,LOC107562848,LOC107742295,LOC107701536,LOC107753950,LOC108410411,LOC103041464	coding	upstream	316122	339825 ~ 358332 (-)
si:dkey-171c9.3	LOC107692004,LOC107742319	coding	upstream	338320	362023 ~ 367395 (-)
gpr185b	gpr185b,LOC107669001,LOC107562838,LOC107588216,LOC107742332,LOC107691958,LOC108267436	coding	upstream	522400	546103 ~ 553394 (-)
LOC122349555	LOC107704198,LOC107750288,LOC107658248,LOC107567655	non-coding	downstream	19537	1991 ~ 4067 (-)
LOC122349723	rictora,LOC107658248,LOC107725140,LOC107704198	non-coding	downstream	21740	1457 ~ 1864 (-)
G48720	NA	non-coding	upstream	32702	56405 ~ 64136 (-)
G48733	NA	non-coding	upstream	63847	87550 ~ 89420 (-)
G48736	NA	non-coding	upstream	97316	121019 ~ 121395 (-)
G48741	NA	non-coding	upstream	146296	169999 ~ 170927 (-)
G48743	NA	non-coding	upstream	148591	172294 ~ 173013 (-)
si:dkey-112a7.4	si:dkey-112a7.4	other	upstream	187638	211341 ~ 213685 (-)
G48823	LOC107667730	other	upstream	246666	270369 ~ 274498 (-)
LOC122348397	zgc:92429,LOC107588137,LOC107753943,LOC107668941,LOC103044742,LOC108434854,LOC108267498	other	upstream	795934	819637 ~ 829670 (-)
zgc:162171	zgc:162171,LOC107588217,LOC107753986,LOC107742285,LOC107691949,LOC107668889,LOC103045050	other	upstream	856883	880586 ~ 888958 (-)
zgc:153151	NA	other	upstream	1017219	1040922 ~ 1046317 (-)

Expression

Co-expression Network