G59845 (LOC107698412,LOC107571775,LOC107726226,LOC100537613)


Basic Information

Item Value
gene id G59845
gene name LOC107698412,LOC107571775,LOC107726226,LOC100537613
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1021192 ~ 1022914 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU88509
ccccATCTTAATAGTACatctaaaaagtaaataaacctTTAACTATTAGGAAAAAAGAGAACTTGTGTACGACTTTAAAGAGGAATGTAGAATTCTCATGAACAACGCAAAAATAATCTTCATTTACATACAAACTCTTTCATTTCAGATCAGtcaaaaaatctacttttatcAAGTAACTTTTAGTCCAAAGTCTGTGCACCTCACATTGAATCCAAAACTTTCATCACACGGTTATTCCTAACTAGTACTTCCCCAAACAACCAACAAACTAAGACTGAACTTaccaacaaacatttctgtaatagaaatgaagctaaaataaaagttctaaAATCAGTAAAACTGGAATAAAAAGAACAGCTAAACAgaaagctaaaaataataataaaaacctatgagctgaaaatataaagataaaagatgttttaaaaggGAGGAGCGTGTCAGACCTTGATGTTTCCCTCGGCCGAGCCGCTGATGAAGCAGCTCTCGGTCGAGTCGACGGCCAGAGCTTTGACCGGAGAGTCGTGGGCCTGGAAGCTCTGCCTCTGGATCTTCAGACTGAGGTCCAGAACCCCGATCCAGCCCCGCCGGCCTCCGCTGAGAAGAAGCTGCTGCTTAGAGGCCAGAGCCAGGACCGTAGAGCCAGACTCATGACACACGAAACCTGAGAGACAACTATTAGACCCTAGGAggactagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGACTGAGCGCTCCGTCTGCATCCACGATCCC

Function

NR:

description
PREDICTED: dmX-like protein 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88509 True 765 lncRNA 0.42 2 1021192 1022914

Neighbor

gene id symbol gene type direction distance location
hsd17b4 hsd17b4 coding upstream 4627 1005559 ~ 1016565 (+)
LOC122351116 ppic,LOC107704600,LOC107713556,LOC107726227,LOC107566397,LOC100333141,LOC107703627 coding upstream 97984 918543 ~ 923208 (+)
LOC122351049 cep120,zgc:163014,LOC107726217,LOC107712640,LOC107694735 coding upstream 144245 853071 ~ 876947 (+)
LOC122350421 slc12a2,LOC107697601,LOC107712558,LOC108442001,LOC108265961,LOC107573338,LOC105890695,LOC107726215 coding upstream 179260 822359 ~ 841932 (+)
LOC122350422 NA coding upstream 200507 810039 ~ 820685 (+)
sema6a LOC107661172,LOC107663594 coding downstream 46927 1069841 ~ 1129502 (+)
cdo1 cdo1,LOC107729053,LOC107573765,LOC103396961 coding downstream 147735 1170649 ~ 1178671 (+)
tmed7 LOC107729055,LOC107728255,LOC107661170,LOC108265697,LOC107663596,LOC107572957,LOC107573769 coding downstream 162855 1185769 ~ 1187485 (+)
LOC122350615 fem1c,LOC107728259,LOC107572967,LOC106580179 coding downstream 165434 1188348 ~ 1199937 (+)
LOC122350068 ccdc112,LOC107573794,LOC107578772 coding downstream 181327 1204241 ~ 1209643 (+)
G59814 NA non-coding upstream 44486 973486 ~ 976706 (+)
G59824 NA non-coding upstream 61021 958679 ~ 960171 (+)
G59825 NA non-coding upstream 62961 957223 ~ 958231 (+)
G59811 NA non-coding upstream 70219 947677 ~ 950973 (+)
G59815 NA non-coding upstream 146993 873888 ~ 874199 (+)
G59876 NA non-coding downstream 134008 1156922 ~ 1161160 (+)
G59877 NA non-coding downstream 139506 1162420 ~ 1164776 (+)
G59898 NA non-coding downstream 245270 1268184 ~ 1268392 (+)
G59899 NA non-coding downstream 245524 1268438 ~ 1268674 (+)
G59914 NA non-coding downstream 369229 1392143 ~ 1393428 (+)
znf608 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107704598,LOC107573349,LOC107726216 other upstream 169188 842077 ~ 852004 (+)
G59807 NA other upstream 216353 803653 ~ 804839 (+)
cdc14b cdc14b,LOC107661524,LOC107704583,LOC107568104,LOC107726879,LOC107570987 other upstream 470505 537775 ~ 550687 (+)
pggt1b pggt1b other downstream 187901 1210815 ~ 1218804 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other downstream 892546 1915460 ~ 1918371 (+)
polb polb,LOC107670984,LOC107722860 other downstream 991945 2014859 ~ 2020034 (+)
LOC122350053 NA other downstream 1007910 2030824 ~ 2035980 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other downstream 1014785 2037699 ~ 2039836 (+)

Expression


Co-expression Network