G59876


Basic Information

Item Value
gene id G59876
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1156922 ~ 1161160 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU88548
AATCTGATACtttattttgttgcaaaaaGGAAATAGAAGCAGCACTTAAAAACCAAAGAGAAGCTACCAGCATCAGAAAAGAGAAGacaaatcatatataaatatactctGAATACAGTCATATCATTTAGGCATATACAGCGTCACCGAGATATTTCCATACTGGAATGTTTGTCAGGCGTGATGTTGAgagcgccacacacacacacacacacacacacacacacacacacacacacacacacacactcacacacacacacgtattcaaacacactctcacacacactcacgcattcaaacacactctcacacacacacacacacacacgcatttaaacacacacacatacacactcactcactcactcacacacactcaaacacactcacacgcatttaaacactctcacacacacacaaacacactcaaaccgaaacacacacacacatttaaacacacacagagagagagagagagtgagagaggacagaagaatcaaataaatacttcaTAGACAGCATCACACAGTGCCTTCTTCGTCTGTGATGCAACTCAAGATCAGCTGGACTCAGGTAAACACAGTCTCACAGTTCTGTGCAGCGGTCACTATTTAAAAGACGGCAGGTTTGGCACTTTGATGCTGATGTCCCCGATGTTGATGTTCTTGGGCATCTCTGGCAAGTTCATGTTCTTGACGGCCGACACGGCACGAGCCGGAGCCCCCGCGATCCCAGcctgaacacacaaacacgcagtTACACAGAGAACCGGTCTAGACCAGCACAGACCGGTCTAGACCATCACAAACCAGGGGAGACCAGCAGACACACCATACATCACAGGATGCAAACAAACGCTGTGATCTGAAAGCTCTGCTCATGCAAAACCAGACGGGATGAAAAAGAGTGAA
>TU88549
TCTCAATAATAAATGGCTTCTACTAGCTCCTTCACAagagattattaaaaaaatgttttttacactaagaaaaaaatgactgaaagcTTCTTTTGAGAAGCTAAGACGGTTCTTCTCTTCTGAAATGTTGAATGTTTCTAAGAGTCAGACTCAGAAGTGAGCGGGACGTCACCTTTTTAGGAGCAAATATCCCGAGTCGGATCTTCTCCAGAACCTCGGGAGCAGCTGCAGCCCAGACCTGAGCAAACACCTGGGCCTTCTCCGTCTGGACGCTGAGGTTCTCCAGCTGCTGCCTGAGAGACGCCGGCTTCAGGTTATGATAGACGGCCTGAGCGAGAAACACACTCTCAcacacacacacacacacacgcatttaaacacacacacatacacactcactcactcactcacacacactcaaacacactcacacgcatttaaacactctcacacacacacaaacacactcaaaccgaaacacacacacacatttaaacacacacagagagagagagagagtgagagaggacagaagaatcaaataaatacttcaTAGACAGCATCACACAGTGCCTTCTTCGTCTGTGATGCAACTCAAGATCAGCTGGACTCAGGTAAACACAGTCTCACAGTTCTGTGCAGCGGTCACTATTTAAAAGACGGCAGGTTTGGCACTTTGATGCTGATGTCCCCGATGTTGATGTTCTTGGGCATCTCTGGCAAGTTCATGTTCTTGACGGCCGACACGGCACGAGCCGGAGCCCCCGCGATCCCAGcctgaacacacaaacacgcagtTACACAGAGAACCGGTCTAGACCAGCACAGACCGGTCTAGACCATCACAAACCAGGGGAGACCAGCAGACACACCATACATCACAGGATGCAAACAAACGCTGTGATCTGAAAGCTCTGCTCATGCAAAACCAGACGGGATGAAAAAGAGTGAAAACTACAGAAAGCAGATGACAGAGAGCAGATCGAGCTGCAGAAACTGATCCAGACGCCGTGAGACGCACAAAGACCGAGCCGGGTCTACAGGACTCACAGTCCGATgctaaaaaacatttgcaaaaacaactccatcatgtttttttttgtcctgcttTCCAATTAATAtcaaactgcagctgggttattttgattaaatagtcatttaaaataataatcattataaaaac

Function

GO:

id name namespace
GO:1902562 H4 histone acetyltransferase complex cellular_component
GO:0031248 protein acetyltransferase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0035267 NuA4 histone acetyltransferase complex cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0000123 histone acetyltransferase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990234 transferase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:1902493 acetyltransferase complex cellular_component
GO:0043189 H4/H2A histone acetyltransferase complex cellular_component
GO:0032777 Piccolo NuA4 histone acetyltransferase complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88548 False 914 lncRNA 0.45 2 1159946 1160929
TU88549 True 1183 lncRNA 0.46 2 1156922 1161160

Neighbor

gene id symbol gene type direction distance location
sema6a LOC107661172,LOC107663594 coding upstream 27420 1069841 ~ 1129502 (+)
hsd17b4 hsd17b4 coding upstream 140357 1005559 ~ 1016565 (+)
LOC122351116 ppic,LOC107704600,LOC107713556,LOC107726227,LOC107566397,LOC100333141,LOC107703627 coding upstream 233714 918543 ~ 923208 (+)
LOC122351049 cep120,zgc:163014,LOC107726217,LOC107712640,LOC107694735 coding upstream 279975 853071 ~ 876947 (+)
LOC122350421 slc12a2,LOC107697601,LOC107712558,LOC108442001,LOC108265961,LOC107573338,LOC105890695,LOC107726215 coding upstream 314990 822359 ~ 841932 (+)
cdo1 cdo1,LOC107729053,LOC107573765,LOC103396961 coding downstream 9489 1170649 ~ 1178671 (+)
tmed7 LOC107729055,LOC107728255,LOC107661170,LOC108265697,LOC107663596,LOC107572957,LOC107573769 coding downstream 24609 1185769 ~ 1187485 (+)
LOC122350615 fem1c,LOC107728259,LOC107572967,LOC106580179 coding downstream 27188 1188348 ~ 1199937 (+)
LOC122350068 ccdc112,LOC107573794,LOC107578772 coding downstream 43081 1204241 ~ 1209643 (+)
trim36 trim36 coding downstream 58564 1219724 ~ 1235577 (+)
G59845 LOC107698412,LOC107571775,LOC107726226,LOC100537613 non-coding upstream 134008 1021192 ~ 1022914 (+)
G59814 NA non-coding upstream 180216 973486 ~ 976706 (+)
G59824 NA non-coding upstream 196751 958679 ~ 960171 (+)
G59825 NA non-coding upstream 198691 957223 ~ 958231 (+)
G59811 NA non-coding upstream 205949 947677 ~ 950973 (+)
G59877 NA non-coding downstream 1260 1162420 ~ 1164776 (+)
G59898 NA non-coding downstream 107024 1268184 ~ 1268392 (+)
G59899 NA non-coding downstream 107278 1268438 ~ 1268674 (+)
G59914 NA non-coding downstream 230983 1392143 ~ 1393428 (+)
G59903 NA non-coding downstream 234887 1396047 ~ 1491642 (+)
znf608 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107704598,LOC107573349,LOC107726216 other upstream 304918 842077 ~ 852004 (+)
G59807 NA other upstream 352083 803653 ~ 804839 (+)
cdc14b cdc14b,LOC107661524,LOC107704583,LOC107568104,LOC107726879,LOC107570987 other upstream 606235 537775 ~ 550687 (+)
pggt1b pggt1b other downstream 49655 1210815 ~ 1218804 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other downstream 754300 1915460 ~ 1918371 (+)
polb polb,LOC107670984,LOC107722860 other downstream 853699 2014859 ~ 2020034 (+)
LOC122350053 NA other downstream 869664 2030824 ~ 2035980 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other downstream 876539 2037699 ~ 2039836 (+)

Expression


Co-expression Network