G59902 (dtx1,LOC107692206,LOC107572068,LOC107671029,LOC101885597)


Basic Information

Item Value
gene id G59902
gene name dtx1,LOC107692206,LOC107572068,LOC107671029,LOC101885597
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1401759 ~ 1494731 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU88594
tttttaaatcaacctgGTTCAGTGCTAATTTAGCGTTATTTAGTTAATTGATATAATTATTTGTGACCCTGATAATGGGAGCAAAACGAACCAGAAagagaatataaataatataaatgatataaataattaattgttatattttttctatttttctattttttttccgcATTTCAGTctacatagtttttatttttactttactttcaattttagaaaataggaAATACTGTTTTGGcaatagctgaaataaaaataaatacattttcttttattttagtacatttttttttaattccaattaacaattttagttacttttgattttagttttagttaaaataaatatcatctctttttttaattaattaattaattttgctttagcttatttaaatgcttgttttgtctttttaaagtatattttaaatcatttaaatcaagtCATTTCGAGGCCCTGGACCCCCGGTTGAGAACCGCTGCAAAACGCTCAACTTTATTTCCAGCATAATAAATGAACTAGAAATGCCAATTTTGACGATGTTGATTCATTTTTGGATCATTCGACTGCCTTAAATGCACACTTCAGTGCACGAAATCTAATTACAAATGGGCAACAATCATATTCAACCGACATCACGACTGGACGCCGCTCGCATGCAATTCAAAAGGACAATTATTTAAAAGGTGCGTCGTGAAACGGCGCTCTAGTAAAGTAGTATGCCAGTATTCTGATCCAAACACAGCCCAGATAAACCCCGTCTGCAGCCAGAAAGCCGCGCTCTCAGATCAATGACACAAAAGAGATACAAAGCAGGATAGGATATGAATCATTGCATATTTCAAGAAGACATCCTATTCATCTTATTCATTCTAAAAAGTTAAAACGCACGCAGAAGGATCCTCAAATCTCAGCGTTCGCTCTGAGCTCCACTAATTACTCTGAAGTTCAAAAGTAGCACACGAGCCGGAGAGCTGAATGTTTTGAAGTGCAGATATTTTATGCAGCGCTTGCACAAACATCAAAAAACGGCTCCGAAAATCTGCTTACGGATCCATCTACAACAACTACAGGCTTCCTCCTTTAATCGGTTACATATACGGAGGCCAAAAACATCAGGAGAACTGTCTGAAAGTGATGCggttttaaaaaacatcaacatgGAAACTTCTCCACGTTATCCAGGCCGATATACCAGGAAATGGAATTAACGATATTTGGCGTTTTTGAGATCATCAGCTACTAATTGACAGATTGTTCATTTAGCTTTGAAATAGCTTTCTAGTAAATAATGGGTAAAATAGGtcttcatttagttttataaagACTCTTCTGCGTTAAGCACAGTAAGCAGCCGAGTAATGTTTCATTAGTCACGTTTTTGAATGAACCGAGTGAGCCAATGATTCGCTTTTTGAAAGAATCAGGCGTTTGATTGAATTGAGTGAGCCGACGATTCAGTGACTCAATCGTTTAAACGGTCACTGGCTTCGTTACTGACTGAATGAGCCATTTGAACAAATCgagtgagtcagtgattcagtgGCTGATTCATAAAGGCAGtcacttttttaatttctgaaagaatcagctg
>TU88595
ATTTGAACAAATCgagtgagtcagtgattcagtgGCTGATTCATAAAGGCAGTCActtttaatttctgaaagaatcagctgtttgaatgaaTCGAATAAACCGAGTATTTAGTGACTCATTCGTGAAGACAGCAGCTACTTTCGTTAACGAATGAATCAGGAGTTTGATTGAATTGAATGAACTGATGATTCTGTGACTCGCTCATTTAAAGAGTCGTTATTTCATTATtggctgattcattcattaGTCGCTGCTTTATTTCTTACTGAATCagccatttaaataaatcagtcttattcataaatgaatcaGGTGTTTGATTgaattgaatgattcagtgactcaaaaaacagtttaaaaagtCACTTGCTTTTTTACTGACTGAATCAAATCGACAATCTCCAGCTTTATCTCTTAATGAATCAGCCATTTGAATAAATCAATGACTCATTAATAAAGATCGAATCATCTGCttgaataaatcaattggacgaATAATTCAACGACTCGCTCGTTAAAATTTGCCGCCGCCTACCATTTCatttcgttttttaaaaaaccattTCATATTCCGTTTATCAATATTTACGCAACACTGAATCTTTGTAAAGCTACGCATCTGTAAAGTTTATGCAACACTTAAATGATCATCCGGGGGGACATTTCCTAGCCGAAACTGATAAGTAATCATGttattaattagattaaaaattcaaattactTGACAGCTCTAGATATAACACAACCCCACTAATGAGTGTGTATATACAACTACCACATGCACCGGTCTGGGCCCAGATGCATTCTGGGTAGCCTTGAAAAAGAGCGTCGCGAGAGAAAGAGCGCTTCGACAGCAAATGAGGAACAGATTAGAGTAATTTGTATTGGTTTCATCACTCCATCCTCCACGTCTCCTCGGCTCTCGCTCGAGGTCAGCGAGGGCCGTGGTTCTCGGAGAGGTCAAAGGTCTCTCCGGCGGTCAGGAACGCCTCGGCTcgaggtgcgtgtgtgtgtgtgcgtgcgggCCGAGCTTCAGTCCTTCAGGTTGTCCTCTCCGACGCCCTGAGCGGCCAGTTCCCTCATCACGTTGTCCAGGTAGTTGGGGTCGGGGTAGCCGTGGCCCGTGAGGTTGGAGCCGAACTCTGTTTTGTGGTGGATCTCGTTCCAGACGACCGTGTCCGTCTCCCCCGTGGTGCTGGACGTCCCGATGGTGAAGATCAGGCGACGGTCCCACGCCGTGATGAGCAACTTCAACACCT
>TU88596
GTAGCACACGAGCCGGAGAGCTGAATGTTTTGAAGTGCAGATATTTTATGCAGCGCTTGCACAAACATCAAAAACGGGTTCGAAAATCTGCTTACGGATCCATCTACAACAACTACAGGCTTCCTCCTTTAATCGGTTACATATACGGAGGCCAAAACATCAGGAGAACTGTCTGAAAGTGATgcgttttaaaaacatcaacatgGAAACTTCTCCACGTTATCCAGGCCGATATACCAGGAAATGGAATTAACGATATTTGGCGCTTTTGAGATCATCAGCTACTAATTGACAGATTGTTCATTTAGCTTTGAAATAGCTTTCTAGTAAATAATGGGTAAAATAGGtcttcatttagttttataaagACTCTTCTGCGTTAAGCACAGTAAGCAGCCGAGTAATGTTTCATTAGTCACGTTTTTGAATGAACCGAGTGAGCCAATGATTCGCTTTTTGAAAGAATCAGGCGTTTGATTGAATTGAGTGAGCCGACGATTCAGTGACTCAATCGTTTAAACGGTCACTGGCTTCGTTACTGACTGAATGAGCCATTTGAACAAATCgagtgagtcagtgattcagtgGCTGATTCATAAAGGCAGtcacttttttaatttctgaaagaatcagctgtttgaatgaaTCGAATAAACCGAGTATTTAGTGACTCATTCGTGAAGACAGCAGCTACTTTCGTTAACGAATGAATCAGGAGTTTGATTGAATTGAATGAACTGATGATTCTGTGACTCGCTTCATTTAAAAGAGTGAGCTTTATTATtggctgattcattcattaGTCGCTGCTTTATTTCTCACTGAATCAGCCATTTGAATAAATCAGTCttattcataaatgaatcaGGCGTTTGATTGAATTGAGTGAGCCGACGATTCAGTGACTCAATCGTTTAAACGGTCACTGGCTTCGTTACTGACTGAATGAGCCATTTGAACAAATCgagtgagtcagtgattcagtgGCTGATTCATAAAGGCAGtcacttttttaatttctgaaagaatcagctg
>TU88599
GTAGCACACGAGCCGGAGAGCTGAATGTTTTGAAGTGCAGATATTTTATGCAGCGCTTGCACAAACATCAAAAACGGGTTCGAAAATCTGCTTACGGATCCATCTACAACAACTACAGGCTTCCTCCTTTAATCGGTTACATATACGGAGGCCAAAACATCAGGAGAACTGTCTGAAAGTGATgcgttttaaaaacatcaacatgGAAACTTCTCCACGTTATCCAGGCCGATATACCAGGAAATGGAATTAACGATATTTGGCGCTTTTGAGATCATCAGCTACTAATTGACAGATTGTTCATTTAGCTTTGAAATAGCTTTCTAGTAAATAATGGGTAAAATAGGtcttcatttagttttataaagACTCTTCTGCGTTAAGCACAGTAAGCAGCCGAGTAATGTTTCATTAGTCACGTTTTTGAATGAACCGAGTGAGCCAATGATTCGCTTTTTGAAAGAATCAGGCGTTTGATTGAATTGAGTGAGCCGACGATTCAGTGACTCAATCGTTTAAACGGTCACTGGCTTCGTTACTGACTGAATGAGCCATTTGAACAAATCgagtgagtcagtgattcagtgGCTGATTCATAAAGGCAGtcacttttttaatttctgaaagaatcagctgtttgaatgaaTCGAATAAACCGAGTATTTAGTGACTCATTCGTGAAGACAGCAGCTACTTTCGTTAACGAATGAATCAGGAGTTTGATTGAATTGAATGAACTGATGATTCTGTGACTCGCTCATTTAAAGAGTCGTTATTTCATTATtggctgattcattcattaGTCGCTGCTTTATTTCTTACTGAATCagccatttaaataaatcagtcttattcataaatgaatcaGGTGTTTGATTgaattgaatgattcagtgactcaaaaaacagtttaaaaagtCACTTGCTTTTTTACTGACTGAATCAAATCGACAATCTCCAGCTTTATCTCTTAATGAATCAGCCATTTGAATAAATCAATGACTCATTAATAAAGATCGAATCATCTGCttgaataaatcaattggacgaATAATTCAACGACTCGCTCGTTAAAATTTGCCGCCGCCTACCATTTCatttcgttttttaaaaaaccattTCATATTCCGTTTATCAATATTTACGCAACACTGAATCTTTGTAAAGCTACGCATCTGTAAAGTTTATGCAACACTTAAATGATCATCCGGGGGGACATTTCCTAGCCGAAACTGATAAGTAATCATGttattaattagattaaaaattcaaattactTGACAGCTCTAGATATAACACAACCCCACTAATGAGTGTGTATATACAACTACCACATGCACCGGTCTGGGCCCAGATGCATTCTGGGTAGCCTTGAAAAAGAGCGTCGCGAGAGAAAGAGCGCTTCGACAGCAAATGAGGAACAGATTAGAGTAATTTGTATTGGTTTCATCACTCCATCCTCCACGTCTCCTCGGCTCTCGCTCGAGGTCAGCGAGGGCCGTGGTTCTCGGAGAGGTCAAAGGTCTCTCCGGCGGTCAGGAACGCCTCGGCTcgaggtgcgtgtgtgtgtgtgcgtgcgggCCGAGCTTCAGTCCTTCAGGTTGTCCTCTCCGACGCCCTGAGCGGCCAGTTCCCTCATCACGTTGTCCAGGTAGTTGGGGTCGGGGTAGCCGTGGCCCGTGAGGTTGGAGCCGAACTCTGTTTTGTGGTGGATCTCGTTCCAGACGACCGTGTCCGTCTCCCCCGTGGTGCTGGACGTCCCGATGGTGAAGATCAGGCGACGGTCCCACGCCGTGATGAGCAACTTCAACACCT

Function

symbol description
dtx1 Predicted to enable transferase activity and zinc ion binding activity. Acts upstream of with a negative effect on Notch signaling pathway. Acts upstream of or within glial cell differentiation and neuron differentiation. Predicted to be located in cytoplasm. Is expressed in nervous system and spinal cord neural tube. Orthologous to human DTX1 (deltex E3 ubiquitin ligase 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase DTX1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88594 False 1595 lncRNA 0.35 2 1401759 1493171
TU88595 False 1260 lncRNA 0.43 2 1403667 1494731
TU88596 False 1035 lncRNA 0.39 2 1402724 1493171
TU88599 True 1815 lncRNA 0.42 3 1402724 1494731

Neighbor

gene id symbol gene type direction distance location
spats2 LOC107749411,LOC107701385,LOC107573793,LOC107661167,LOC107572966,LOC107728257 coding upstream 135525 1253631 ~ 1266234 (+)
LOC122350095 NA coding upstream 158601 1236932 ~ 1243158 (+)
trim36 trim36 coding upstream 166182 1219724 ~ 1235577 (+)
LOC122350068 ccdc112,LOC107573794,LOC107578772 coding upstream 192116 1204241 ~ 1209643 (+)
LOC122350615 fem1c,LOC107728259,LOC107572967,LOC106580179 coding upstream 201822 1188348 ~ 1199937 (+)
LOC122351062 NA coding downstream 64389 1559120 ~ 1560367 (+)
LOC122350660 NA coding downstream 153747 1648478 ~ 1649618 (+)
serpind1 serpind1,LOC107671000,LOC107738496,LOC107559590,LOC107722856,LOC107698014,LOC107560052 coding downstream 307964 1802695 ~ 1807402 (+)
snap29 snap29,LOC107722859,LOC107560055,LOC107726963 coding downstream 327905 1822636 ~ 1827411 (+)
LOC122350512 NA coding downstream 442030 1936761 ~ 1946949 (+)
G59914 NA non-coding upstream 8331 1392143 ~ 1393428 (+)
G59899 NA non-coding upstream 133085 1268438 ~ 1268674 (+)
G59898 NA non-coding upstream 133367 1268184 ~ 1268392 (+)
G59877 NA non-coding upstream 236983 1162420 ~ 1164776 (+)
G59876 NA non-coding upstream 240599 1156922 ~ 1161160 (+)
G59938 NA non-coding downstream 64401 1559132 ~ 1648740 (+)
G59940 LOC102197881,LOC106633085 non-coding downstream 66728 1561459 ~ 1694820 (+)
G59939 NA non-coding downstream 88258 1582989 ~ 1780567 (+)
G59952 NA non-coding downstream 100981 1595712 ~ 1792467 (+)
G59953 NA non-coding downstream 106617 1601348 ~ 1799170 (+)
pggt1b pggt1b other upstream 182955 1210815 ~ 1218804 (+)
znf608 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107704598,LOC107573349,LOC107726216 other upstream 549755 842077 ~ 852004 (+)
G59807 NA other upstream 596920 803653 ~ 804839 (+)
cdc14b cdc14b,LOC107661524,LOC107704583,LOC107568104,LOC107726879,LOC107570987 other upstream 851072 537775 ~ 550687 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other downstream 420729 1915460 ~ 1918371 (+)
polb polb,LOC107670984,LOC107722860 other downstream 520128 2014859 ~ 2020034 (+)
LOC122350053 NA other downstream 536093 2030824 ~ 2035980 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other downstream 542968 2037699 ~ 2039836 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 2353883 3848614 ~ 3850557 (+)

Expression


Co-expression Network