G60003


Basic Information

Item Value
gene id G60003
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 723190 ~ 725000 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU88765
CCGCTGTTCTTTGTCCTCGCGGTGACTGACTGCATATGATCCCGCTgaatgtacattatttattcatccgtTTACAGTCTGTGTTCATCAAAGAGAAGATCTGAAGGATGGTGTTAGTTCATGTCGGATATTTGGTTCTTCCTGTCTTTGGCTCAGTGAGAAATAGAGTCTATGGAGGCTGAATCTACATTCTGCATTATCAGAtcattgtgttttaatgatCATCTGTGTTCTGATCCCTCCTCATTTCCTATTTCCATCAGAAGACGACAAACATCTCAGATCTGCTCCCTTCCTGAGAACAAAACACACTAAAACCAGAGCTAACACATTTAGAGCATAAACTACTGTCTGTATGTCAAGTGCTGTAGTTTAACCCACATCAGTAGCTCTAGAAGAGTGACTCATGTATGTCCCATCCAGCTTTGGTAGTCAACATGTatgtaaattcctgtaaaatggATGCATTTTGTGCTTGGATGATCCCACGCACCTTTAGCTGTCACCTGCATAACGTGTGCTTCATTCATCGCCCTTCTGATTTTACACGGTCATTCACAATCATGTTAtgaggaaaagcaaaaaaacaacagacaaaaaaaaaacggccaAAGTGGTAGCCTAACACGCAGACGATTGGCTCCAATTGCATCGAATGCGATGTCCAAATTGTGTCCAAAATGTCATCCATTTGGCAGGGATGTTGATTTCCTGCACTGCTACTGAGATCCTCTATTAGAGCAATGCAAATGTCTATTGTTTGGTTGTGGTTTCTCTACCTTTTGTTCTGGTAATAGACTTCAGTGCATGAAtcacgttattattattattattattcatattattttgattCTACATTGAATAGACTCCAATGTAATCTTTCTGTAGTCAAGATGTACCCTGCTGTACTGTAACGTGCTGTAGCCGATGCATCTGCTCATTGGATGTTGCTTTTGTTCTGTTAACCCTGTACTGAGCATGGTGGGCCTTGCTATTGGtcaatgttgttttatttgttgcatgGACTTATTATTATGACACAAATCCac

Function

GO:

id name namespace
GO:0043254 regulation of protein-containing complex assembly biological_process
GO:0044087 regulation of cellular component biogenesis biological_process
GO:0008154 actin polymerization or depolymerization biological_process
GO:1902903 regulation of supramolecular fiber organization biological_process
GO:0048522 positive regulation of cellular process biological_process
GO:0090066 regulation of anatomical structure size biological_process
GO:0051493 regulation of cytoskeleton organization biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0032970 regulation of actin filament-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0030832 regulation of actin filament length biological_process
GO:0030833 regulation of actin filament polymerization biological_process
GO:0033043 regulation of organelle organization biological_process
GO:0030041 actin filament polymerization biological_process
GO:0110053 regulation of actin filament organization biological_process
GO:0008064 regulation of actin polymerization or depolymerization biological_process
GO:0032535 regulation of cellular component size biological_process
GO:0032271 regulation of protein polymerization biological_process

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU88765 True 1049 lncRNA 0.40 2 723190 725000

Neighbor

gene id symbol gene type direction distance location
fabp1b.1 fabp1b.1,LOC107573351,LOC107726869,LOC107704576,LOC107579792,LOC107712467,LOC107661522,LOC103043953 coding downstream 92045 630354 ~ 631145 (-)
sprb spr,LOC107661521,LOC107569671,LOC107726883,LOC107712600,LOC107568099 coding downstream 112276 607450 ~ 610914 (-)
lzts3b lzts3,LOC107569677,LOC107712591,LOC107661533 coding downstream 121346 588798 ~ 601844 (-)
ubox5 NA coding downstream 136489 581029 ~ 586701 (-)
LOC122350794 LOC107661539,LOC107704586,LOC107726870,LOC107568101,LOC107581163 coding downstream 147012 572583 ~ 576178 (-)
spinb zgc:110697,LOC107726871,LOC107704578,LOC107577825 coding upstream 18193 743193 ~ 747336 (-)
lrrc2 lrrc2,LOC107697579 coding upstream 35218 760218 ~ 770520 (-)
srp19 srp19,LOC107704595 coding upstream 58648 783648 ~ 786422 (-)
nudt12 nudt12 coding upstream 78023 803023 ~ 809151 (-)
prdm6 prdm6,LOC107713557,LOC107726219 coding upstream 160192 885192 ~ 914375 (-)
G60036 NA non-coding downstream 62092 660435 ~ 661098 (-)
G60016 NA non-coding downstream 105718 615281 ~ 617472 (-)
G59739 NA non-coding downstream 171308 514767 ~ 551882 (-)
G59750 NA non-coding downstream 175279 545919 ~ 547911 (-)
G59688 NA non-coding downstream 486533 236074 ~ 236657 (-)
G60061 NA non-coding upstream 30624 755624 ~ 756643 (-)
G60079 NA non-coding upstream 91461 816461 ~ 820768 (-)
G60085 NA non-coding upstream 107727 832727 ~ 835131 (-)
G60080 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107726216,LOC107704598,LOC107573349 non-coding upstream 120419 845419 ~ 852159 (-)
G60112 NA non-coding upstream 150959 875959 ~ 876869 (-)
ccl27a NA other downstream 152217 565886 ~ 570973 (-)
csgalnact1b LOC107712620 other upstream 7793 732793 ~ 739372 (-)
G60098 NA other upstream 410401 1135401 ~ 1138152 (-)
commd10 commd10,LOC107728250,LOC107663591 other upstream 415698 1140698 ~ 1159286 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other upstream 624171 1349171 ~ 1356953 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other upstream 836546 1561546 ~ 1606609 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G137206 NA non-coding NC_048566.1 CM023220.2 36155002 ~ 36155236 (+)